Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21001

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21000 and SM_b21001 overlap by 14 nucleotidesSM_b21001 and SM_b21002 are separated by 77 nucleotidesSM_b21002 and SM_b21003 are separated by 64 nucleotides SM_b21000: SM_b21000 - transporter, at 1,236,556 to 1,237,689 _b21000 SM_b21001: SM_b21001 - hypothetical protein, at 1,237,676 to 1,238,050 _b21001 SM_b21002: SM_b21002 - methionine aminopeptidase, at 1,238,128 to 1,238,877 _b21002 SM_b21003: SM_b21003 - oxidoreductase, at 1,238,942 to 1,239,985 _b21003 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -1 0 1at 1236.788 kb on + strand, within SM_b21000at 1236.789 kb on - strand, within SM_b21000at 1236.908 kb on + strand, within SM_b21000at 1236.908 kb on + strand, within SM_b21000at 1236.953 kb on + strand, within SM_b21000at 1236.953 kb on + strand, within SM_b21000at 1236.954 kb on - strand, within SM_b21000at 1236.954 kb on - strand, within SM_b21000at 1237.064 kb on + strand, within SM_b21000at 1237.065 kb on - strand, within SM_b21000at 1237.085 kb on + strand, within SM_b21000at 1237.086 kb on - strand, within SM_b21000at 1237.086 kb on - strand, within SM_b21000at 1237.288 kb on - strand, within SM_b21000at 1237.458 kb on + strandat 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.458 kb on + strand, within SM_b21000at 1237.459 kb on - strand, within SM_b21000at 1237.459 kb on - strand, within SM_b21000at 1237.459 kb on - strand, within SM_b21000at 1237.459 kb on - strand, within SM_b21000at 1237.569 kb on - strand, within SM_b21000at 1237.654 kb on - strandat 1237.655 kb on + strandat 1237.655 kb on + strandat 1237.656 kb on - strandat 1237.866 kb on + strand, within SM_b21001at 1237.866 kb on + strand, within SM_b21001at 1237.866 kb on + strand, within SM_b21001at 1237.867 kb on - strand, within SM_b21001at 1238.187 kb on - strandat 1238.187 kb on - strandat 1238.216 kb on + strand, within SM_b21002at 1238.216 kb on + strand, within SM_b21002at 1238.604 kb on + strand, within SM_b21002at 1238.604 kb on + strand, within SM_b21002at 1238.605 kb on - strand, within SM_b21002at 1238.699 kb on + strand, within SM_b21002at 1238.700 kb on - strand, within SM_b21002at 1238.904 kb on + strandat 1238.904 kb on + strandat 1238.905 kb on - strandat 1238.922 kb on + strandat 1238.922 kb on + strandat 1238.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,236,788 + SM_b21000 0.20 +0.5
1,236,789 - SM_b21000 0.21 +0.1
1,236,908 + SM_b21000 0.31 +0.9
1,236,908 + SM_b21000 0.31 +0.7
1,236,953 + SM_b21000 0.35 +0.2
1,236,953 + SM_b21000 0.35 +0.4
1,236,954 - SM_b21000 0.35 +0.1
1,236,954 - SM_b21000 0.35 -0.2
1,237,064 + SM_b21000 0.45 -0.4
1,237,065 - SM_b21000 0.45 +0.3
1,237,085 + SM_b21000 0.47 +0.0
1,237,086 - SM_b21000 0.47 -0.9
1,237,086 - SM_b21000 0.47 -1.3
1,237,288 - SM_b21000 0.65 -0.2
1,237,458 + +0.2
1,237,458 + SM_b21000 0.80 -0.4
1,237,458 + SM_b21000 0.80 -0.1
1,237,458 + SM_b21000 0.80 +0.2
1,237,458 + SM_b21000 0.80 +0.2
1,237,458 + SM_b21000 0.80 +0.1
1,237,458 + SM_b21000 0.80 -0.1
1,237,458 + SM_b21000 0.80 -0.7
1,237,459 - SM_b21000 0.80 +0.6
1,237,459 - SM_b21000 0.80 +0.0
1,237,459 - SM_b21000 0.80 -0.5
1,237,459 - SM_b21000 0.80 -0.0
1,237,569 - SM_b21000 0.89 +0.2
1,237,654 - -0.4
1,237,655 + +0.2
1,237,655 + -1.0
1,237,656 - -0.0
1,237,866 + SM_b21001 0.51 +0.7
1,237,866 + SM_b21001 0.51 +0.5
1,237,866 + SM_b21001 0.51 +1.1
1,237,867 - SM_b21001 0.51 +0.7
1,238,187 - -0.1
1,238,187 - -1.0
1,238,216 + SM_b21002 0.12 +0.1
1,238,216 + SM_b21002 0.12 +0.5
1,238,604 + SM_b21002 0.63 +1.2
1,238,604 + SM_b21002 0.63 -0.9
1,238,605 - SM_b21002 0.64 +0.2
1,238,699 + SM_b21002 0.76 +0.2
1,238,700 - SM_b21002 0.76 +1.1
1,238,904 + -0.7
1,238,904 + -0.1
1,238,905 - +1.0
1,238,922 + -0.3
1,238,922 + +0.8
1,238,922 + +0.1

Or see this region's nucleotide sequence