Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20995

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20994 and SM_b20995 are separated by 244 nucleotidesSM_b20995 and SM_b20996 are separated by 123 nucleotidesSM_b20996 and SM_b20997 are separated by 85 nucleotides SM_b20994: SM_b20994 - hypothetical protein, at 1,230,297 to 1,230,830 _b20994 SM_b20995: SM_b20995 - GTP-binding protein EngA, at 1,231,075 to 1,232,505 _b20995 SM_b20996: SM_b20996 - hypothetical protein, at 1,232,629 to 1,233,297 _b20996 SM_b20997: SM_b20997 - nitrate reductase, at 1,233,383 to 1,233,967 _b20997 Position (kb) 1231 1232 1233Strain fitness (log2 ratio) -2 -1 0 1 2at 1230.194 kb on + strandat 1230.195 kb on - strandat 1230.240 kb on - strandat 1230.250 kb on - strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.274 kb on - strandat 1230.274 kb on - strandat 1230.281 kb on - strandat 1230.463 kb on + strand, within SM_b20994at 1230.464 kb on - strand, within SM_b20994at 1230.464 kb on - strand, within SM_b20994at 1230.730 kb on + strand, within SM_b20994at 1230.730 kb on + strand, within SM_b20994at 1230.914 kb on + strandat 1230.927 kb on + strandat 1230.928 kb on - strandat 1230.928 kb on - strandat 1230.939 kb on - strandat 1230.940 kb on + strandat 1230.941 kb on - strandat 1230.983 kb on + strandat 1230.987 kb on + strandat 1230.987 kb on + strandat 1230.999 kb on - strandat 1231.012 kb on + strandat 1232.510 kb on - strandat 1232.510 kb on - strandat 1232.561 kb on - strandat 1232.561 kb on - strandat 1233.345 kb on - strandat 1233.366 kb on - strandat 1233.366 kb on - strandat 1233.366 kb on - strandat 1233.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,230,194 + -0.1
1,230,195 - +0.1
1,230,240 - +0.7
1,230,250 - +2.3
1,230,273 + -0.0
1,230,273 + -0.1
1,230,273 + +0.3
1,230,273 + -1.3
1,230,274 - +1.7
1,230,274 - +0.2
1,230,281 - +0.8
1,230,463 + SM_b20994 0.31 -1.8
1,230,464 - SM_b20994 0.31 -0.0
1,230,464 - SM_b20994 0.31 +0.1
1,230,730 + SM_b20994 0.81 -2.0
1,230,730 + SM_b20994 0.81 -1.0
1,230,914 + +0.3
1,230,927 + -0.2
1,230,928 - -2.5
1,230,928 - +1.5
1,230,939 - -0.5
1,230,940 + -1.6
1,230,941 - +0.1
1,230,983 + -0.7
1,230,987 + +0.3
1,230,987 + -0.6
1,230,999 - -1.2
1,231,012 + -0.2
1,232,510 - -0.3
1,232,510 - -0.0
1,232,561 - +1.0
1,232,561 - +0.5
1,233,345 - +0.3
1,233,366 - -0.2
1,233,366 - +0.5
1,233,366 - -0.2
1,233,385 - -1.0

Or see this region's nucleotide sequence