Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20971

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20969 and SM_b20970 overlap by 8 nucleotidesSM_b20970 and SM_b20971 are separated by 12 nucleotidesSM_b20971 and SM_b20972 overlap by 8 nucleotides SM_b20969: SM_b20969 - sugar uptake ABC transporter permease, at 1,199,134 to 1,199,946 _b20969 SM_b20970: SM_b20970 - sugar uptake ABC transporter permease, at 1,199,939 to 1,200,898 _b20970 SM_b20971: SM_b20971 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,200,911 to 1,202,143 _b20971 SM_b20972: SM_b20972 - sugar uptake ABC transporter ATP-binding protein, at 1,202,136 to 1,203,311 _b20972 Position (kb) 1200 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1 2at 1199.940 kb on + strandat 1199.940 kb on + strandat 1199.940 kb on + strandat 1199.982 kb on + strandat 1199.983 kb on - strandat 1199.985 kb on + strandat 1199.985 kb on + strandat 1199.985 kb on + strandat 1199.985 kb on + strandat 1199.986 kb on - strandat 1199.986 kb on - strandat 1199.986 kb on - strandat 1200.102 kb on + strand, within SM_b20970at 1200.103 kb on - strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.108 kb on + strand, within SM_b20970at 1200.109 kb on - strand, within SM_b20970at 1200.109 kb on - strand, within SM_b20970at 1200.109 kb on - strand, within SM_b20970at 1200.109 kb on - strand, within SM_b20970at 1200.109 kb on - strand, within SM_b20970at 1200.123 kb on + strand, within SM_b20970at 1200.123 kb on + strand, within SM_b20970at 1200.124 kb on - strand, within SM_b20970at 1200.124 kb on - strand, within SM_b20970at 1200.165 kb on - strand, within SM_b20970at 1200.165 kb on - strand, within SM_b20970at 1200.343 kb on + strand, within SM_b20970at 1200.472 kb on - strand, within SM_b20970at 1200.616 kb on - strand, within SM_b20970at 1200.616 kb on - strand, within SM_b20970at 1200.687 kb on + strand, within SM_b20970at 1200.687 kb on + strand, within SM_b20970at 1200.688 kb on - strand, within SM_b20970at 1200.688 kb on - strand, within SM_b20970at 1200.709 kb on + strand, within SM_b20970at 1200.794 kb on + strand, within SM_b20970at 1201.045 kb on - strand, within SM_b20971at 1201.095 kb on + strand, within SM_b20971at 1201.095 kb on + strand, within SM_b20971at 1201.096 kb on - strand, within SM_b20971at 1201.096 kb on - strand, within SM_b20971at 1201.311 kb on + strand, within SM_b20971at 1201.311 kb on + strand, within SM_b20971at 1201.312 kb on - strand, within SM_b20971at 1201.312 kb on - strand, within SM_b20971at 1201.333 kb on + strand, within SM_b20971at 1201.489 kb on + strand, within SM_b20971at 1201.490 kb on - strand, within SM_b20971at 1201.497 kb on + strand, within SM_b20971at 1201.498 kb on - strand, within SM_b20971at 1201.498 kb on - strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.602 kb on + strand, within SM_b20971at 1201.714 kb on - strand, within SM_b20971at 1201.714 kb on - strand, within SM_b20971at 1201.863 kb on + strand, within SM_b20971at 1201.863 kb on + strand, within SM_b20971at 1201.864 kb on - strand, within SM_b20971at 1201.867 kb on - strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.886 kb on - strand, within SM_b20971at 1201.886 kb on - strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1202.135 kb on - strandat 1202.196 kb on - strandat 1202.360 kb on + strand, within SM_b20972at 1202.361 kb on - strand, within SM_b20972at 1202.361 kb on - strand, within SM_b20972at 1202.507 kb on + strand, within SM_b20972at 1202.530 kb on - strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.746 kb on + strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.999 kb on + strand, within SM_b20972at 1203.000 kb on - strand, within SM_b20972at 1203.045 kb on - strand, within SM_b20972at 1203.061 kb on + strand, within SM_b20972

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,199,940 + +0.1
1,199,940 + +0.8
1,199,940 + -1.0
1,199,982 + +0.4
1,199,983 - +0.4
1,199,985 + +0.9
1,199,985 + -0.0
1,199,985 + +0.3
1,199,985 + +0.3
1,199,986 - -0.6
1,199,986 - -0.2
1,199,986 - +0.4
1,200,102 + SM_b20970 0.17 +0.4
1,200,103 - SM_b20970 0.17 +0.8
1,200,108 + SM_b20970 0.18 +1.4
1,200,108 + SM_b20970 0.18 +0.4
1,200,108 + SM_b20970 0.18 -0.4
1,200,108 + SM_b20970 0.18 -0.0
1,200,108 + SM_b20970 0.18 +0.3
1,200,108 + SM_b20970 0.18 +0.1
1,200,108 + SM_b20970 0.18 -0.3
1,200,109 - SM_b20970 0.18 +0.2
1,200,109 - SM_b20970 0.18 -0.9
1,200,109 - SM_b20970 0.18 +0.9
1,200,109 - SM_b20970 0.18 +0.1
1,200,109 - SM_b20970 0.18 -0.9
1,200,123 + SM_b20970 0.19 +0.0
1,200,123 + SM_b20970 0.19 +2.1
1,200,124 - SM_b20970 0.19 +1.1
1,200,124 - SM_b20970 0.19 +0.0
1,200,165 - SM_b20970 0.24 +0.1
1,200,165 - SM_b20970 0.24 -0.4
1,200,343 + SM_b20970 0.42 -0.4
1,200,472 - SM_b20970 0.56 -0.1
1,200,616 - SM_b20970 0.71 +1.6
1,200,616 - SM_b20970 0.71 -0.0
1,200,687 + SM_b20970 0.78 -0.3
1,200,687 + SM_b20970 0.78 +1.0
1,200,688 - SM_b20970 0.78 +0.2
1,200,688 - SM_b20970 0.78 +1.1
1,200,709 + SM_b20970 0.80 +0.2
1,200,794 + SM_b20970 0.89 +0.1
1,201,045 - SM_b20971 0.11 -0.2
1,201,095 + SM_b20971 0.15 -0.3
1,201,095 + SM_b20971 0.15 +0.8
1,201,096 - SM_b20971 0.15 -0.5
1,201,096 - SM_b20971 0.15 -0.2
1,201,311 + SM_b20971 0.32 -0.2
1,201,311 + SM_b20971 0.32 +0.5
1,201,312 - SM_b20971 0.33 +0.2
1,201,312 - SM_b20971 0.33 +1.7
1,201,333 + SM_b20971 0.34 +1.1
1,201,489 + SM_b20971 0.47 +0.3
1,201,490 - SM_b20971 0.47 +0.5
1,201,497 + SM_b20971 0.48 +1.1
1,201,498 - SM_b20971 0.48 +1.9
1,201,498 - SM_b20971 0.48 +0.2
1,201,530 + SM_b20971 0.50 +0.6
1,201,530 + SM_b20971 0.50 +0.6
1,201,530 + SM_b20971 0.50 +0.1
1,201,530 + SM_b20971 0.50 -2.0
1,201,531 - SM_b20971 0.50 -1.3
1,201,531 - SM_b20971 0.50 -0.3
1,201,531 - SM_b20971 0.50 -0.5
1,201,531 - SM_b20971 0.50 -0.4
1,201,602 + SM_b20971 0.56 +0.2
1,201,714 - SM_b20971 0.65 -0.5
1,201,714 - SM_b20971 0.65 +0.7
1,201,863 + SM_b20971 0.77 +1.5
1,201,863 + SM_b20971 0.77 +0.3
1,201,864 - SM_b20971 0.77 -0.1
1,201,867 - SM_b20971 0.78 -0.2
1,201,885 + SM_b20971 0.79 -0.0
1,201,885 + SM_b20971 0.79 +0.1
1,201,885 + SM_b20971 0.79 +0.2
1,201,885 + SM_b20971 0.79 +1.2
1,201,886 - SM_b20971 0.79 +0.2
1,201,886 - SM_b20971 0.79 -0.5
1,201,887 + SM_b20971 0.79 -0.2
1,201,887 + SM_b20971 0.79 +1.5
1,201,887 + SM_b20971 0.79 -0.5
1,201,887 + SM_b20971 0.79 -0.0
1,201,887 + SM_b20971 0.79 +0.1
1,201,887 + SM_b20971 0.79 +0.2
1,201,887 + SM_b20971 0.79 +0.2
1,201,887 + SM_b20971 0.79 -0.8
1,201,887 + SM_b20971 0.79 -0.3
1,201,888 - SM_b20971 0.79 -0.1
1,201,888 - SM_b20971 0.79 +1.3
1,201,888 - SM_b20971 0.79 +0.3
1,201,888 - SM_b20971 0.79 +0.7
1,201,888 - SM_b20971 0.79 +1.4
1,201,888 - SM_b20971 0.79 +0.5
1,201,888 - SM_b20971 0.79 -0.2
1,201,888 - SM_b20971 0.79 +0.1
1,201,888 - SM_b20971 0.79 +0.1
1,201,888 - SM_b20971 0.79 -0.7
1,202,135 - -0.0
1,202,196 - -0.5
1,202,360 + SM_b20972 0.19 +1.0
1,202,361 - SM_b20972 0.19 -2.4
1,202,361 - SM_b20972 0.19 +0.6
1,202,507 + SM_b20972 0.32 -0.2
1,202,530 - SM_b20972 0.34 -0.8
1,202,644 + SM_b20972 0.43 +0.2
1,202,644 + SM_b20972 0.43 +0.7
1,202,644 + SM_b20972 0.43 -1.3
1,202,645 - SM_b20972 0.43 -0.3
1,202,645 - SM_b20972 0.43 -0.7
1,202,645 - SM_b20972 0.43 +0.3
1,202,720 + SM_b20972 0.50 +0.7
1,202,720 + SM_b20972 0.50 +0.3
1,202,721 - SM_b20972 0.50 +0.2
1,202,721 - SM_b20972 0.50 +0.5
1,202,746 + SM_b20972 0.52 -0.1
1,202,747 - SM_b20972 0.52 +0.1
1,202,747 - SM_b20972 0.52 -0.0
1,202,747 - SM_b20972 0.52 -0.1
1,202,841 + SM_b20972 0.60 -0.1
1,202,841 + SM_b20972 0.60 -0.7
1,202,999 + SM_b20972 0.73 -0.6
1,203,000 - SM_b20972 0.73 +1.6
1,203,045 - SM_b20972 0.77 -0.4
1,203,061 + SM_b20972 0.79 -0.0

Or see this region's nucleotide sequence