Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20805 and SM_b20806 are separated by 127 nucleotides SM_b20806 and SM_b20807 are separated by 132 nucleotides SM_b20807 and SM_b20808 overlap by 25 nucleotides SM_b20808 and SM_b20809 are separated by 236 nucleotides
SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932
_b20805
SM_b20806: SM_b20806 - hypothetical protein, at 591,060 to 591,749
_b20806
SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519
_b20807
SM_b20808: SM_b20808 - hypothetical protein, at 593,495 to 594,271
_b20808
SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497
_b20809
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.904 kb on - strand at 590.953 kb on + strand at 590.963 kb on + strand at 590.963 kb on + strand at 590.964 kb on - strand at 591.011 kb on + strand at 591.012 kb on - strand at 591.078 kb on + strand at 591.079 kb on - strand at 591.079 kb on - strand at 591.134 kb on + strand, within SM_b20806 at 591.148 kb on + strand, within SM_b20806 at 591.199 kb on + strand, within SM_b20806 at 591.207 kb on + strand, within SM_b20806 at 591.258 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.540 kb on + strand, within SM_b20806 at 591.541 kb on - strand, within SM_b20806 at 591.544 kb on + strand, within SM_b20806 at 591.634 kb on - strand, within SM_b20806 at 591.647 kb on + strand, within SM_b20806 at 591.727 kb on + strand at 591.728 kb on - strand at 591.731 kb on + strand at 591.804 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 591.967 kb on + strand at 592.062 kb on + strand, within SM_b20807 at 592.062 kb on + strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.070 kb on - strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.164 kb on + strand, within SM_b20807 at 592.165 kb on - strand, within SM_b20807 at 592.200 kb on + strand, within SM_b20807 at 592.232 kb on - strand, within SM_b20807 at 592.238 kb on + strand, within SM_b20807 at 592.406 kb on - strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.494 kb on + strand, within SM_b20807 at 592.495 kb on - strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.539 kb on + strand, within SM_b20807 at 592.540 kb on - strand, within SM_b20807 at 592.551 kb on - strand, within SM_b20807 at 592.605 kb on + strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.606 kb on - strand, within SM_b20807 at 592.671 kb on + strand, within SM_b20807 at 592.685 kb on + strand, within SM_b20807 at 592.686 kb on - strand, within SM_b20807 at 592.740 kb on - strand, within SM_b20807 at 592.839 kb on + strand, within SM_b20807 at 592.876 kb on + strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.922 kb on - strand, within SM_b20807 at 592.924 kb on + strand, within SM_b20807 at 592.925 kb on - strand, within SM_b20807 at 592.939 kb on + strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 592.940 kb on - strand, within SM_b20807 at 593.004 kb on + strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.005 kb on - strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.166 kb on + strand, within SM_b20807 at 593.360 kb on + strand at 593.457 kb on + strand at 593.484 kb on + strand at 593.484 kb on + strand at 593.497 kb on - strand at 593.498 kb on + strand at 593.703 kb on + strand, within SM_b20808 at 593.704 kb on - strand, within SM_b20808 at 593.772 kb on + strand, within SM_b20808 at 593.819 kb on - strand at 593.895 kb on + strand, within SM_b20808 at 593.895 kb on + strand, within SM_b20808 at 593.929 kb on - strand, within SM_b20808 at 593.941 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.950 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.960 kb on + strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.979 kb on - strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.982 kb on + strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 593.983 kb on - strand, within SM_b20808 at 594.160 kb on + strand, within SM_b20808 at 594.273 kb on + strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.274 kb on - strand at 594.288 kb on - strand at 594.338 kb on + strand at 594.372 kb on + strand at 594.473 kb on + strand at 594.515 kb on + strand at 594.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 590,904 - +0.3 590,953 + -0.2 590,963 + +0.1 590,963 + -2.4 590,964 - +0.5 591,011 + -1.2 591,012 - +0.4 591,078 + -0.1 591,079 - -0.4 591,079 - +1.5 591,134 + SM_b20806 0.11 -0.2 591,148 + SM_b20806 0.13 +0.4 591,199 + SM_b20806 0.20 +1.5 591,207 + SM_b20806 0.21 -0.1 591,258 + SM_b20806 0.29 -0.3 591,540 + SM_b20806 0.70 -1.7 591,540 + SM_b20806 0.70 +1.1 591,541 - SM_b20806 0.70 -0.0 591,544 + SM_b20806 0.70 +1.5 591,634 - SM_b20806 0.83 +1.9 591,647 + SM_b20806 0.85 +2.5 591,727 + +0.5 591,728 - +0.3 591,731 + +0.5 591,804 + -1.0 591,967 + -0.0 591,967 + -0.1 591,967 + +0.2 591,967 + -1.0 591,967 + -0.2 592,062 + SM_b20807 0.11 -0.4 592,062 + SM_b20807 0.11 -1.1 592,070 - SM_b20807 0.11 -1.4 592,070 - SM_b20807 0.11 -0.2 592,070 - SM_b20807 0.11 +0.5 592,164 + SM_b20807 0.17 +1.1 592,164 + SM_b20807 0.17 -0.3 592,164 + SM_b20807 0.17 -0.1 592,165 - SM_b20807 0.17 -0.1 592,200 + SM_b20807 0.19 -1.7 592,232 - SM_b20807 0.21 -0.2 592,238 + SM_b20807 0.22 +0.8 592,406 - SM_b20807 0.32 -0.1 592,494 + SM_b20807 0.37 -0.4 592,494 + SM_b20807 0.37 -0.4 592,495 - SM_b20807 0.37 -1.7 592,539 + SM_b20807 0.40 -0.8 592,539 + SM_b20807 0.40 -0.6 592,540 - SM_b20807 0.40 -2.3 592,551 - SM_b20807 0.41 -0.6 592,605 + SM_b20807 0.44 -0.2 592,606 - SM_b20807 0.44 -0.5 592,606 - SM_b20807 0.44 -0.4 592,671 + SM_b20807 0.48 -1.1 592,685 + SM_b20807 0.49 +0.2 592,686 - SM_b20807 0.49 -0.3 592,740 - SM_b20807 0.52 -0.1 592,839 + SM_b20807 0.58 -0.6 592,876 + SM_b20807 0.61 -0.1 592,922 - SM_b20807 0.63 -0.7 592,922 - SM_b20807 0.63 +0.6 592,924 + SM_b20807 0.64 +2.5 592,925 - SM_b20807 0.64 -1.2 592,939 + SM_b20807 0.65 -1.2 592,940 - SM_b20807 0.65 -1.5 592,940 - SM_b20807 0.65 -2.1 592,940 - SM_b20807 0.65 -0.1 593,004 + SM_b20807 0.68 -0.6 593,005 - SM_b20807 0.69 -0.4 593,005 - SM_b20807 0.69 -0.7 593,166 + SM_b20807 0.78 -0.2 593,166 + SM_b20807 0.78 -0.7 593,166 + SM_b20807 0.78 -0.5 593,360 + -1.6 593,457 + +0.4 593,484 + -0.3 593,484 + -0.7 593,497 - -0.3 593,498 + -0.0 593,703 + SM_b20808 0.27 +1.2 593,704 - SM_b20808 0.27 -0.1 593,772 + SM_b20808 0.36 -0.4 593,819 - +0.9 593,895 + SM_b20808 0.51 -0.4 593,895 + SM_b20808 0.51 +0.1 593,929 - SM_b20808 0.56 -0.2 593,941 + SM_b20808 0.57 +0.9 593,950 + SM_b20808 0.59 -0.8 593,950 + SM_b20808 0.59 -1.0 593,960 + SM_b20808 0.60 -0.2 593,960 + SM_b20808 0.60 -0.6 593,979 - SM_b20808 0.62 -0.1 593,979 - SM_b20808 0.62 -0.8 593,979 - SM_b20808 0.62 -0.9 593,979 - SM_b20808 0.62 +0.1 593,982 + SM_b20808 0.63 -0.4 593,982 + SM_b20808 0.63 -0.2 593,982 + SM_b20808 0.63 -0.3 593,982 + SM_b20808 0.63 +0.4 593,983 - SM_b20808 0.63 -0.7 593,983 - SM_b20808 0.63 -0.2 593,983 - SM_b20808 0.63 -0.3 593,983 - SM_b20808 0.63 -0.6 593,983 - SM_b20808 0.63 -0.7 594,160 + SM_b20808 0.86 -0.5 594,273 + +0.2 594,274 - -1.2 594,274 - +0.2 594,274 - -0.1 594,288 - -1.2 594,338 + -2.9 594,372 + -1.6 594,473 + -0.7 594,515 + -0.5 594,516 - +0.3
Or see this region's nucleotide sequence