Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20387 and SM_b20388 are separated by 393 nucleotides SM_b20388 and SM_b20389 are separated by 14 nucleotides
SM_b20387: SM_b20387 - transcriptional regulator, at 398,867 to 399,586
_b20387
SM_b20388: SM_b20388 - NADPH:quinone oxidoreductase, at 399,980 to 400,960
_b20388
SM_b20389: SM_b20389 - hypothetical protein, at 400,975 to 402,000
_b20389
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 399.057 kb on + strand, within SM_b20387 at 399.131 kb on + strand, within SM_b20387 at 399.153 kb on - strand, within SM_b20387 at 399.570 kb on - strand at 399.570 kb on - strand at 399.880 kb on + strand at 399.981 kb on + strand at 399.981 kb on + strand at 399.982 kb on - strand at 400.066 kb on - strand at 400.066 kb on - strand at 400.158 kb on + strand, within SM_b20388 at 400.158 kb on + strand, within SM_b20388 at 400.159 kb on - strand, within SM_b20388 at 400.193 kb on + strand, within SM_b20388 at 400.220 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.265 kb on + strand, within SM_b20388 at 400.311 kb on - strand at 400.377 kb on + strand, within SM_b20388 at 400.378 kb on - strand, within SM_b20388 at 400.450 kb on + strand, within SM_b20388 at 400.451 kb on - strand, within SM_b20388 at 400.464 kb on + strand, within SM_b20388 at 400.489 kb on - strand, within SM_b20388 at 400.539 kb on - strand, within SM_b20388 at 400.613 kb on + strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.615 kb on - strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 401.643 kb on - strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.862 kb on - strand, within SM_b20389
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 399,057 + SM_b20387 0.26 +0.0 399,131 + SM_b20387 0.37 -1.8 399,153 - SM_b20387 0.40 -0.4 399,570 - +0.2 399,570 - -1.9 399,880 + +0.1 399,981 + -1.4 399,981 + -0.1 399,982 - -0.3 400,066 - -0.2 400,066 - +1.0 400,158 + SM_b20388 0.18 +0.2 400,158 + SM_b20388 0.18 -0.7 400,159 - SM_b20388 0.18 +0.1 400,193 + SM_b20388 0.22 -0.2 400,220 + SM_b20388 0.24 -0.4 400,228 + SM_b20388 0.25 +0.9 400,228 + SM_b20388 0.25 -0.9 400,265 + SM_b20388 0.29 -2.0 400,311 - +2.6 400,377 + SM_b20388 0.40 +0.6 400,378 - SM_b20388 0.41 -0.3 400,450 + SM_b20388 0.48 -0.8 400,451 - SM_b20388 0.48 -0.0 400,464 + SM_b20388 0.49 -1.6 400,489 - SM_b20388 0.52 +0.4 400,539 - SM_b20388 0.57 -0.8 400,613 + SM_b20388 0.65 -1.2 400,614 - SM_b20388 0.65 -0.7 400,614 - SM_b20388 0.65 -0.4 400,615 - SM_b20388 0.65 -0.0 400,659 + SM_b20388 0.69 -0.5 400,659 + SM_b20388 0.69 +3.6 400,856 + SM_b20388 0.89 +0.3 400,856 + SM_b20388 0.89 +0.2 400,856 + SM_b20388 0.89 -0.1 400,856 + SM_b20388 0.89 +0.3 400,857 - SM_b20388 0.89 -0.8 400,857 - SM_b20388 0.89 -0.2 400,857 - SM_b20388 0.89 -0.1 401,643 - SM_b20389 0.65 -0.1 401,690 + SM_b20389 0.70 -1.0 401,690 + SM_b20389 0.70 +0.3 401,690 + SM_b20389 0.70 -0.2 401,690 + SM_b20389 0.70 +0.0 401,690 + SM_b20389 0.70 -0.0 401,691 - SM_b20389 0.70 -0.6 401,691 - SM_b20389 0.70 -0.2 401,691 - SM_b20389 0.70 -0.4 401,691 - SM_b20389 0.70 +0.5 401,691 - SM_b20389 0.70 +0.0 401,770 + SM_b20389 0.77 +0.1 401,770 + SM_b20389 0.77 -1.2 401,770 + SM_b20389 0.77 -0.6 401,770 + SM_b20389 0.77 +1.0 401,770 + SM_b20389 0.77 +0.4 401,770 + SM_b20389 0.77 -0.1 401,771 - SM_b20389 0.78 -0.6 401,771 - SM_b20389 0.78 -0.3 401,862 - SM_b20389 0.86 +0.2
Or see this region's nucleotide sequence