Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19955

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse18; day3
2,276,555	+				+1.9
2,276,560	+				+0.3
2,276,560	+				-2.2
2,276,560	+				+1.6
2,276,563	-				-1.3
2,276,568	-				-0.3
2,276,577	-				+0.6
2,276,577	-				+0.6
2,276,577	-				-2.9
2,276,579	+				-1.8
2,276,587	-				+1.9
2,276,587	-				+0.4
2,276,587	-				+1.1
2,276,592	+				+3.0
2,276,627	+				+0.8
2,276,658	-				-1.7
2,276,661	+				-2.8
2,276,669	-				+1.2
2,276,714	+				-3.5
2,276,727	+				+2.8
2,276,727	+				-1.4
2,276,739	+				-2.6
2,276,747	-				+0.9
2,276,747	-				-1.8
2,276,749	-				+2.5
2,276,770	-				+0.2
2,276,770	-				+1.7
2,276,779	+				+0.7
2,276,824	+				+1.6
2,276,832	-				+0.2
2,276,839	-				-0.9
2,276,839	-				-1.8
2,276,846	-				-2.3
2,276,861	+				+1.0
2,276,861	+				-3.2
2,276,861	+				+3.2
2,276,864	-				+2.5
2,276,868	+				-2.8
2,276,869	-				-0.3
2,276,869	-				-2.1
2,276,869	-				+0.6
2,276,881	-				+1.4
2,276,885	+				+0.3
2,276,890	+				-1.4
2,276,890	+				+1.3
2,276,933	+				-1.8
2,276,945	+				-0.6
2,276,978	+		BBR_RS19950	0.12	+1.2
2,276,986	+		BBR_RS19950	0.13	+1.1
2,276,986	+		BBR_RS19950	0.13	-2.1
2,277,005	-		BBR_RS19950	0.17	-1.8
2,277,008	+		BBR_RS19950	0.18	-1.5
2,277,031	+		BBR_RS19950	0.22	+1.6
2,277,039	-		BBR_RS19950	0.23	-0.1
2,277,057	+		BBR_RS19950	0.27	+2.2
2,277,062	+		BBR_RS19950	0.28	+1.6
2,277,070	-		BBR_RS19950	0.29	+0.1
2,277,070	-		BBR_RS19950	0.29	+0.9
2,277,075	+		BBR_RS19950	0.30	-2.0
2,277,089	-		BBR_RS19950	0.33	-2.0
2,277,094	+		BBR_RS19950	0.34	+2.2
2,277,114	+		BBR_RS19950	0.38	-0.2
2,277,120	+		BBR_RS19950	0.39	+0.5
2,277,120	+		BBR_RS19950	0.39	+1.6
2,277,141	+		BBR_RS19950	0.43	+1.3
2,277,143	-		BBR_RS19950	0.43	-2.3
2,277,151	-		BBR_RS19950	0.45	+1.0
2,277,165	+		BBR_RS19950	0.47	+2.3
2,277,171	+		BBR_RS19950	0.48	+0.9
2,277,173	-		BBR_RS19950	0.49	+1.2
2,277,175	-		BBR_RS19950	0.49	+2.6
2,277,179	-		BBR_RS19950	0.50	+1.5
2,277,186	+		BBR_RS19950	0.51	-0.7
2,277,186	+		BBR_RS19950	0.51	-1.2
2,277,194	-		BBR_RS19950	0.53	-1.7
2,277,206	+		BBR_RS19950	0.55	-2.0
2,277,206	+		BBR_RS19950	0.55	-2.2
2,277,214	-		BBR_RS19950	0.57	-2.4
2,277,214	-		BBR_RS19950	0.57	-1.6
2,277,214	-		BBR_RS19950	0.57	+1.4
2,277,218	+		BBR_RS19950	0.57	+1.1
2,277,226	-		BBR_RS19950	0.59	-1.1
2,277,236	-		BBR_RS19950	0.61	+1.9
2,277,238	-		BBR_RS19950	0.61	+1.7
2,277,240	+		BBR_RS19950	0.62	+2.1
2,277,240	+		BBR_RS19950	0.62	-3.2
2,277,240	+		BBR_RS19950	0.62	-1.1
2,277,240	+		BBR_RS19950	0.62	+1.9
2,277,248	-		BBR_RS19950	0.63	+1.0
2,277,248	-		BBR_RS19950	0.63	-1.3
2,277,248	-		BBR_RS19950	0.63	+0.2
2,277,248	-		BBR_RS19950	0.63	+1.8
2,277,248	-		BBR_RS19950	0.63	+2.0
2,277,248	-		BBR_RS19950	0.63	+0.5
2,277,248	-		BBR_RS19950	0.63	-1.7
2,277,248	-		BBR_RS19950	0.63	-2.7
2,277,255	+		BBR_RS19950	0.64	-1.5
2,277,255	+		BBR_RS19950	0.64	-2.4
2,277,255	+		BBR_RS19950	0.64	+2.3
2,277,255	+		BBR_RS19950	0.64	+1.6
2,277,255	+		BBR_RS19950	0.64	-1.8
2,277,258	-		BBR_RS19950	0.65	+1.3
2,277,258	-		BBR_RS19950	0.65	+1.9
2,277,258	-		BBR_RS19950	0.65	-1.7
2,277,263	+		BBR_RS19950	0.66	+1.4
2,277,263	-		BBR_RS19950	0.66	+0.5
2,277,263	-		BBR_RS19950	0.66	+2.6
2,277,268	-		BBR_RS19950	0.67	+1.4
2,277,276	+		BBR_RS19950	0.68	+3.5
2,277,276	+		BBR_RS19950	0.68	+3.6
2,277,283	+		BBR_RS19950	0.70	+0.5
2,277,284	-		BBR_RS19950	0.70	+2.2
2,277,284	-		BBR_RS19950	0.70	+2.6
2,277,326	-		BBR_RS19950	0.78	-2.9
2,277,333	-		BBR_RS19950	0.79	+0.8
2,277,338	-		BBR_RS19950	0.80	+1.7
2,277,342	+		BBR_RS19950	0.81	+2.1
2,277,342	+		BBR_RS19950	0.81	-0.1
2,277,344	-		BBR_RS19950	0.81	+0.1
2,277,350	+		BBR_RS19950	0.82	-2.6
2,277,350	-		BBR_RS19950	0.82	+0.9
2,277,358	-		BBR_RS19950	0.84	+0.9
2,277,358	-		BBR_RS19950	0.84	+1.1
2,277,365	+		BBR_RS19950	0.85	+2.0
2,277,368	-		BBR_RS19950	0.86	-2.3
2,277,380	+		BBR_RS19950	0.88	+0.6
2,277,380	-		BBR_RS19950	0.88	-2.7
2,277,393	+				-0.9
2,277,394	-				-2.2
2,277,399	-				+0.6
2,277,401	-				-2.3
2,277,401	-				-2.2
2,277,405	+				+0.7
2,277,411	+				+0.6
2,277,413	+				-0.1
2,277,419	-				-2.9
2,277,421	-				-1.4
2,277,423	-				-1.5
2,277,425	+				-0.3
2,277,425	+				-2.2
2,277,433	-				+1.6
2,277,433	-				+0.2
2,277,433	-				+0.8
2,277,433	-				+1.0
2,277,436	+				+1.8
2,277,436	+				-2.7
2,277,436	+				-2.3
2,277,436	+				+2.5
2,277,444	-				+0.8
2,277,457	+				+0.8
2,277,460	-				-2.2
2,277,460	-				+0.6
2,277,460	-				-3.3
2,277,465	-				-2.0
2,277,488	-				-3.3
2,277,491	+				+2.4
2,277,492	-				+1.5
2,277,492	-				+1.6
2,277,504	-				+0.8
2,277,514	+				+1.7
2,277,525	+				-1.8
2,277,532	+				-2.0
2,277,535	-				-1.6
2,277,538	+				-3.1
2,277,540	-				+1.0
2,277,546	-				-1.9
2,277,551	-				+1.7
2,277,576	-		BBR_RS19955	0.13	-2.5
2,277,591	-		BBR_RS19955	0.19	-1.0
2,277,599	+		BBR_RS19955	0.22	+2.6
2,277,609	-		BBR_RS19955	0.25	+1.2
2,277,634	+		BBR_RS19955	0.34	+0.4
2,277,634	-		BBR_RS19955	0.34	+1.9
2,277,643	+		BBR_RS19955	0.38	+2.4
2,277,648	+		BBR_RS19955	0.40	+1.9
2,277,648	+		BBR_RS19955	0.40	-2.4
2,277,651	-		BBR_RS19955	0.41	-2.0
2,277,658	+		BBR_RS19955	0.43	+1.8
2,277,658	+		BBR_RS19955	0.43	+0.7
2,277,663	+		BBR_RS19955	0.45	+1.6
2,277,663	+		BBR_RS19955	0.45	+1.8
2,277,671	-		BBR_RS19955	0.48	-1.4
2,277,671	-		BBR_RS19955	0.48	+0.6
2,277,671	-		BBR_RS19955	0.48	+1.7
2,277,684	+		BBR_RS19955	0.53	+0.4
2,277,699	+		BBR_RS19955	0.58	-1.5
2,277,702	-		BBR_RS19955	0.59	-3.0
2,277,710	-		BBR_RS19955	0.62	+1.4
2,277,712	+		BBR_RS19955	0.63	+1.8
2,277,712	+		BBR_RS19955	0.63	+0.6
2,277,712	+		BBR_RS19955	0.63	-1.6
2,277,712	+		BBR_RS19955	0.63	+0.1
2,277,712	+		BBR_RS19955	0.63	+1.0
2,277,712	+		BBR_RS19955	0.63	+2.6
2,277,712	-		BBR_RS19955	0.63	-0.8
2,277,714	+		BBR_RS19955	0.64	+1.3
2,277,720	-		BBR_RS19955	0.66	+1.0
2,277,720	-		BBR_RS19955	0.66	+1.2
2,277,720	-		BBR_RS19955	0.66	+2.0
2,277,720	-		BBR_RS19955	0.66	+0.3
2,277,720	-		BBR_RS19955	0.66	+2.2
2,277,720	-		BBR_RS19955	0.66	+1.3
2,277,720	-		BBR_RS19955	0.66	-0.4
2,277,722	-		BBR_RS19955	0.67	-2.2
2,277,722	-		BBR_RS19955	0.67	-0.4
2,277,743	-		BBR_RS19955	0.74	+1.2
2,277,755	-		BBR_RS19955	0.79	+2.5
2,277,765	-		BBR_RS19955	0.82	+0.8
2,277,772	+		BBR_RS19955	0.85	-2.8
2,277,773	-		BBR_RS19955	0.85	+1.6
2,277,786	-				+0.6
2,277,786	-				+1.8
2,277,786	-				-2.4
2,277,793	+				-0.9
2,277,793	+				+0.5
2,277,850	+				-2.2
2,277,879	+				-0.8
2,277,896	+				+1.5
2,277,927	-				-2.9
2,277,952	+				-3.3
2,277,952	+				+1.5
2,277,960	-				+0.0
2,277,985	-				-3.2
2,278,011	+				-3.2
2,278,019	-				-1.1
2,278,039	+				+1.6
2,278,039	+				+0.8
2,278,055	-				-0.6
2,278,055	-				-3.7
2,278,055	-				-0.1
2,278,087	+				+1.3
2,278,088	-				-1.1
2,278,100	-				-1.9
2,278,109	-				+0.3
2,278,110	-				+1.1
2,278,154	+		BBR_RS19960	0.13	-2.5
2,278,162	+		BBR_RS19960	0.15	+0.8
2,278,162	+		BBR_RS19960	0.15	-1.4
2,278,162	+		BBR_RS19960	0.15	+0.6
2,278,162	+		BBR_RS19960	0.15	-2.6
2,278,162	+		BBR_RS19960	0.15	+0.7
2,278,162	-		BBR_RS19960	0.15	+1.1
2,278,168	-		BBR_RS19960	0.17	+0.2
2,278,170	-		BBR_RS19960	0.17	+0.8
2,278,170	-		BBR_RS19960	0.17	+1.0
2,278,170	-		BBR_RS19960	0.17	-1.3
2,278,170	-		BBR_RS19960	0.17	-0.9
2,278,179	+		BBR_RS19960	0.19	+1.0
2,278,187	-		BBR_RS19960	0.21	-1.9
2,278,187	-		BBR_RS19960	0.21	-0.1
2,278,197	-		BBR_RS19960	0.24	-0.7
2,278,208	-		BBR_RS19960	0.26	+1.0
2,278,208	-		BBR_RS19960	0.26	+1.3
2,278,208	-		BBR_RS19960	0.26	+2.8
2,278,208	-		BBR_RS19960	0.26	-2.7
2,278,210	+		BBR_RS19960	0.27	-2.1
2,278,217	+		BBR_RS19960	0.28	-1.9
2,278,218	-		BBR_RS19960	0.29	-1.3
2,278,218	-		BBR_RS19960	0.29	+1.0
2,278,218	-		BBR_RS19960	0.29	-2.0
2,278,220	-		BBR_RS19960	0.29	-2.0
2,278,225	-		BBR_RS19960	0.30	-0.5
2,278,235	-		BBR_RS19960	0.33	-0.5
2,278,241	+		BBR_RS19960	0.34	-1.8
2,278,251	+		BBR_RS19960	0.36	-0.7
2,278,259	-		BBR_RS19960	0.38	-0.2
2,278,273	-		BBR_RS19960	0.42	-1.0
2,278,276	-		BBR_RS19960	0.42	+0.2
2,278,291	+		BBR_RS19960	0.46	+0.3
2,278,294	-		BBR_RS19960	0.47	-3.4
2,278,298	+		BBR_RS19960	0.48	-1.4
2,278,314	+		BBR_RS19960	0.51	+0.9
2,278,322	-		BBR_RS19960	0.53	+1.6
2,278,322	-		BBR_RS19960	0.53	-1.5
2,278,322	-		BBR_RS19960	0.53	+1.0
2,278,357	+		BBR_RS19960	0.62	-2.5
2,278,366	+		BBR_RS19960	0.64	+1.2
2,278,366	+		BBR_RS19960	0.64	+1.5
2,278,379	-		BBR_RS19960	0.67	-1.4
2,278,379	-		BBR_RS19960	0.67	-1.6
2,278,381	-		BBR_RS19960	0.67	-2.2
2,278,391	+		BBR_RS19960	0.70	-2.6
2,278,391	+		BBR_RS19960	0.70	-0.1
2,278,391	+		BBR_RS19960	0.70	+2.6
2,278,391	+		BBR_RS19960	0.70	+1.5
2,278,391	+		BBR_RS19960	0.70	-1.5
2,278,391	+		BBR_RS19960	0.70	-0.0
2,278,397	-		BBR_RS19960	0.71	+0.7
2,278,397	-		BBR_RS19960	0.71	+3.4
2,278,399	-		BBR_RS19960	0.72	+1.0
2,278,399	-		BBR_RS19960	0.72	+0.5
2,278,399	-		BBR_RS19960	0.72	+1.6
2,278,399	-		BBR_RS19960	0.72	+2.9
2,278,399	-		BBR_RS19960	0.72	+1.6
2,278,399	-		BBR_RS19960	0.72	-2.7
2,278,399	-		BBR_RS19960	0.72	-0.8
2,278,399	-		BBR_RS19960	0.72	-2.6
2,278,399	-		BBR_RS19960	0.72	+1.3
2,278,399	-		BBR_RS19960	0.72	+2.7
2,278,399	-		BBR_RS19960	0.72	-0.4
2,278,415	-		BBR_RS19960	0.75	-2.9
2,278,421	-		BBR_RS19960	0.77	+0.5
2,278,421	-		BBR_RS19960	0.77	-0.8
2,278,423	+		BBR_RS19960	0.77	-0.2
2,278,431	-		BBR_RS19960	0.79	-0.2
2,278,438	+		BBR_RS19960	0.81	+1.2
2,278,438	+		BBR_RS19960	0.81	-0.1
2,278,438	+		BBR_RS19960	0.81	+1.0
2,278,438	+		BBR_RS19960	0.81	+3.2
2,278,441	-		BBR_RS19960	0.82	+2.0
2,278,443	+		BBR_RS19960	0.82	+1.2
2,278,443	+		BBR_RS19960	0.82	+2.0
2,278,446	-		BBR_RS19960	0.83	+2.9
2,278,464	+		BBR_RS19960	0.87	+3.4
2,278,464	+		BBR_RS19960	0.87	+0.6
2,278,464	+		BBR_RS19960	0.87	-2.9
2,278,472	-		BBR_RS19960	0.89	+0.8
2,278,478	-				+3.0
2,278,485	-				-1.8
2,278,506	+				+1.8
2,278,535	-				+1.2
2,278,535	-				-1.9
2,278,539	+				-0.1
2,278,540	-				-1.5
2,278,542	+				+1.5
2,278,542	-				+1.8
2,278,542	-				-3.4
2,278,543	+				+0.8
2,278,547	-				-0.9
2,278,553	+				-1.6
2,278,556	-				-1.9
2,278,565	+				+1.1
2,278,565	+				-3.2
2,278,570	+				-0.1
2,278,570	+				-1.3
2,278,570	+				+1.7
2,278,570	+				-2.8
2,278,578	-		BBR_RS19965	0.10	+1.6
2,278,580	+		BBR_RS19965	0.11	-0.9
2,278,580	+		BBR_RS19965	0.11	-1.1
2,278,585	+		BBR_RS19965	0.12	+1.1
2,278,588	+		BBR_RS19965	0.13	-1.7
2,278,593	-		BBR_RS19965	0.15	+1.5
2,278,593	-		BBR_RS19965	0.15	-1.1
2,278,611	+		BBR_RS19965	0.20	-1.3
2,278,643	-		BBR_RS19965	0.29	-2.3
2,278,646	-		BBR_RS19965	0.30	+1.5
2,278,656	-		BBR_RS19965	0.33	+0.5
2,278,681	-		BBR_RS19965	0.40	+1.5
2,278,685	+		BBR_RS19965	0.41	+2.2
2,278,705	+		BBR_RS19965	0.47	-3.0
2,278,744	+		BBR_RS19965	0.58	-2.4
2,278,790	-		BBR_RS19965	0.71	-0.5
2,278,792	-		BBR_RS19965	0.71	-1.4