Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19115

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse18; day3
2,060,416	-		BBR_RS19105	0.87	+1.3
2,060,418	+		BBR_RS19105	0.88	-1.0
2,060,435	-				+0.4
2,060,435	-				-0.8
2,060,466	-				+2.8
2,060,472	+				+1.5
2,060,495	+				+1.0
2,060,500	+				-2.6
2,060,508	-				-1.3
2,060,509	+				+0.8
2,060,509	+				-1.2
2,060,518	-				-0.3
2,060,524	-				+1.5
2,060,524	-				+0.3
2,060,555	-				-1.3
2,060,558	+				+1.0
2,060,558	+				+2.7
2,060,566	-				+1.5
2,060,566	-				+0.9
2,060,566	-				-3.1
2,060,566	-				-2.6
2,060,573	+				-2.2
2,060,573	+				-0.7
2,060,573	+				-1.7
2,060,573	+				+2.7
2,060,573	+				-2.1
2,060,573	+				-2.6
2,060,573	+				+2.1
2,060,573	+				-0.5
2,060,575	+				-0.7
2,060,581	-				-1.2
2,060,581	-				-3.4
2,060,605	-				-0.6
2,060,620	+				-0.9
2,060,628	-				+0.0
2,060,628	-				+1.1
2,060,650	+		BBR_RS19110	0.13	+1.2
2,060,650	+		BBR_RS19110	0.13	-2.9
2,060,650	+		BBR_RS19110	0.13	-1.9
2,060,650	+		BBR_RS19110	0.13	-0.6
2,060,653	-		BBR_RS19110	0.13	+1.2
2,060,658	-		BBR_RS19110	0.14	+0.8
2,060,661	+		BBR_RS19110	0.15	-3.2
2,060,667	-		BBR_RS19110	0.16	+0.6
2,060,667	-		BBR_RS19110	0.16	-2.9
2,060,669	-		BBR_RS19110	0.16	-0.7
2,060,669	-		BBR_RS19110	0.16	+0.7
2,060,669	-		BBR_RS19110	0.16	+0.2
2,060,670	-		BBR_RS19110	0.16	-1.6
2,060,672	+		BBR_RS19110	0.17	+0.9
2,060,676	+		BBR_RS19110	0.17	+1.5
2,060,676	+		BBR_RS19110	0.17	-1.7
2,060,701	-		BBR_RS19110	0.22	+0.2
2,060,701	-		BBR_RS19110	0.22	-2.4
2,060,739	-		BBR_RS19110	0.28	-3.3
2,060,751	+		BBR_RS19110	0.31	+1.6
2,060,751	+		BBR_RS19110	0.31	+0.8
2,060,753	-		BBR_RS19110	0.31	+1.9
2,060,759	-		BBR_RS19110	0.32	+0.5
2,060,759	-		BBR_RS19110	0.32	+0.7
2,060,764	-		BBR_RS19110	0.33	+0.6
2,060,764	-		BBR_RS19110	0.33	+3.2
2,060,769	+		BBR_RS19110	0.34	-0.9
2,060,769	-		BBR_RS19110	0.34	+0.3
2,060,777	-		BBR_RS19110	0.35	+1.3
2,060,777	-		BBR_RS19110	0.35	+2.8
2,060,777	-		BBR_RS19110	0.35	+2.2
2,060,793	+		BBR_RS19110	0.38	-3.4
2,060,795	+		BBR_RS19110	0.38	-2.0
2,060,795	+		BBR_RS19110	0.38	+0.4
2,060,822	-		BBR_RS19110	0.43	-0.1
2,060,833	+		BBR_RS19110	0.45	-1.8
2,060,843	-		BBR_RS19110	0.47	+1.6
2,060,851	-		BBR_RS19110	0.48	-1.9
2,060,859	+		BBR_RS19110	0.50	+1.4
2,060,859	+		BBR_RS19110	0.50	+0.1
2,060,867	-		BBR_RS19110	0.51	+1.0
2,060,867	-		BBR_RS19110	0.51	-2.1
2,060,885	+		BBR_RS19110	0.54	+1.7
2,060,932	+		BBR_RS19110	0.62	+0.0
2,060,936	+		BBR_RS19110	0.63	+2.5
2,060,939	+		BBR_RS19110	0.64	+1.9
2,060,940	-		BBR_RS19110	0.64	+2.8
2,060,942	+		BBR_RS19110	0.64	-0.8
2,060,965	-		BBR_RS19110	0.68	-2.1
2,060,967	-		BBR_RS19110	0.69	-2.7
2,060,974	+		BBR_RS19110	0.70	+0.8
2,060,977	-		BBR_RS19110	0.70	-2.5
2,061,006	+		BBR_RS19110	0.75	-0.3
2,061,009	-		BBR_RS19110	0.76	+1.6
2,061,009	-		BBR_RS19110	0.76	+1.0
2,061,022	-		BBR_RS19110	0.78	-1.0
2,061,022	-		BBR_RS19110	0.78	+0.3
2,061,024	+		BBR_RS19110	0.79	+2.8
2,061,032	-		BBR_RS19110	0.80	-0.2
2,061,050	+		BBR_RS19110	0.83	-1.6
2,061,060	+		BBR_RS19110	0.85	-2.1
2,061,081	-		BBR_RS19110	0.89	-2.5
2,061,095	+				+1.5
2,061,095	+				+0.7
2,061,105	-				-1.6
2,061,107	-				+3.5
2,061,117	-				+2.6
2,061,131	+				+1.7
2,061,139	-				+1.7
2,061,163	+				+2.0
2,061,187	+				-1.2
2,061,199	+				-2.1
2,061,200	+				-0.9
2,061,205	-				+0.6
2,061,205	-				-3.4
2,061,222	+				-1.4
2,061,244	-				+1.9
2,061,246	-				+0.7
2,061,248	-				+2.0
2,061,262	-				-2.1
2,061,281	-				-2.8
2,061,285	+				+1.8
2,061,285	+				+0.7
2,061,285	+				+1.0
2,061,290	-				+2.1
2,061,293	-				-2.1
2,061,293	-				-2.4
2,061,295	+				-2.6
2,061,295	+				-0.8
2,061,295	+				+0.6
2,061,297	+				-0.7
2,061,303	-				+0.5
2,061,303	-				-0.1
2,061,308	-				+0.3
2,061,313	-				+0.7
2,061,315	-				-1.9
2,061,316	+				+3.5
2,061,317	-				+0.0
2,061,319	+				+0.1
2,061,327	-				-1.6
2,061,354	+				+0.5
2,061,366	+				-2.7
2,061,366	+				-2.4
2,061,369	+				-1.6
2,061,374	+				+1.2
2,061,375	-				-2.4
2,061,377	-				-0.8
2,061,377	-				-0.9
2,061,383	-				+0.0
2,061,401	+				+0.6
2,061,404	+		BBR_RS19115	0.10	-2.6
2,061,406	+		BBR_RS19115	0.11	+0.8
2,061,412	-		BBR_RS19115	0.14	+0.4
2,061,414	-		BBR_RS19115	0.15	-0.9
2,061,435	-		BBR_RS19115	0.25	-1.8
2,061,438	-		BBR_RS19115	0.27	+0.9
2,061,456	+		BBR_RS19115	0.36	-1.1
2,061,477	-		BBR_RS19115	0.46	-1.4
2,061,491	+		BBR_RS19115	0.53	-0.5
2,061,499	-		BBR_RS19115	0.57	+0.9
2,061,562	-		BBR_RS19115	0.89	-1.7
2,061,569	-				-2.7
2,061,569	-				-2.2
2,061,575	+				+2.2
2,061,584	+				-1.3
2,061,584	+				+0.9
2,061,592	-				+3.1
2,061,593	-				+2.2
2,061,595	-				+1.6
2,061,595	-				-2.3
2,061,595	-				+2.1
2,061,618	-				+0.8
2,061,669	-				-1.0
2,061,676	-				+1.4
2,061,676	-				+0.4
2,061,722	-				+2.5
2,061,735	+				+3.2
2,061,799	+				+5.5
2,061,799	+				-0.5
2,061,807	-				+0.2
2,061,811	+				+1.1
2,061,811	+				+0.3
2,061,811	+				+3.2
2,061,825	+				+1.6
2,061,833	-				+1.0
2,061,859	+				+1.1
2,061,859	+				+1.1
2,061,867	+				-0.4
2,061,867	-				-2.2
2,061,867	-				-1.4
2,061,867	-				-0.1
2,061,867	-				-1.3
2,061,867	-				+0.3
2,061,867	-				-1.0
2,061,882	+				+1.0
2,061,894	+				+1.6
2,061,937	+				+4.5
2,061,963	+		BBR_RS19120	0.10	+0.4
2,061,963	+		BBR_RS19120	0.10	+1.3
2,061,966	-		BBR_RS19120	0.10	+0.2
2,061,966	-		BBR_RS19120	0.10	-0.4
2,061,968	+		BBR_RS19120	0.11	+5.5
2,061,971	-		BBR_RS19120	0.11	-2.6
2,061,981	-		BBR_RS19120	0.11	+1.2
2,062,028	-		BBR_RS19120	0.12	+1.6
2,062,028	-		BBR_RS19120	0.12	+3.0
2,062,099	-		BBR_RS19120	0.14	-1.2
2,062,128	-		BBR_RS19120	0.15	+4.5
2,062,282	-		BBR_RS19120	0.19	+5.5
2,062,309	-		BBR_RS19120	0.20	+2.4
2,062,313	-		BBR_RS19120	0.20	+2.4
2,062,374	+		BBR_RS19120	0.22	+0.2
2,062,374	+		BBR_RS19120	0.22	+4.5
2,062,382	-		BBR_RS19120	0.22	+1.8
2,062,397	-		BBR_RS19120	0.22	+1.6
2,062,398	-		BBR_RS19120	0.22	+1.7
2,062,422	+		BBR_RS19120	0.23	+5.5
2,062,430	-		BBR_RS19120	0.23	-0.9
2,062,446	+		BBR_RS19120	0.24	+2.4
2,062,454	+		BBR_RS19120	0.24	+1.2
2,062,454	-		BBR_RS19120	0.24	+0.7
2,062,482	+		BBR_RS19120	0.25	+0.2
2,062,499	+		BBR_RS19120	0.25	+4.0
2,062,512	-		BBR_RS19120	0.26	+0.1
2,062,517	-		BBR_RS19120	0.26	+2.2
2,062,566	-		BBR_RS19120	0.27	-1.0