Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18710

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse18; day3
1,987,584	+				+0.5
1,987,603	-				+0.1
1,987,608	-				+1.2
1,987,608	-				+2.5
1,987,608	-				+0.8
1,987,608	-				+0.8
1,987,628	+				+0.5
1,987,633	+				-1.3
1,987,721	+				+0.3
1,987,721	+				-2.1
1,987,726	+				-3.3
1,987,731	+				+0.8
1,987,731	+				-0.1
1,987,731	+				+0.6
1,987,731	+				-3.4
1,987,734	-				-1.8
1,987,739	-				-2.7
1,987,739	-				+1.5
1,987,739	-				+1.3
1,987,739	-				+1.7
1,987,798	+				-2.0
1,987,798	+				+0.2
1,987,806	-				-0.1
1,987,842	+				+1.9
1,987,842	+				-3.0
1,987,892	+				-2.1
1,987,901	-				+1.0
1,987,901	-				+2.2
1,987,911	-				-0.9
1,987,911	-				+0.2
1,987,911	-				-1.5
1,987,978	+				+2.6
1,987,980	+				-2.8
1,987,986	-				+1.0
1,987,988	-				+1.5
1,987,996	-				-1.2
1,988,043	-				-2.7
1,988,043	-				-2.8
1,988,047	+				-0.6
1,988,047	+				-2.5
1,988,047	+				-2.3
1,988,047	+				+2.1
1,988,055	-				-0.7
1,988,055	-				+1.0
1,988,100	+				-3.3
1,988,123	-				+0.6
1,988,127	+				-1.6
1,988,160	+				+2.3
1,988,188	-				+0.6
1,988,188	-				+1.1
1,988,226	-				-1.2
1,988,226	-				+2.0
1,988,292	-		BBR_RS18710	0.10	-2.7
1,988,322	+		BBR_RS18710	0.13	+1.2
1,988,325	-		BBR_RS18710	0.13	-1.0
1,988,349	+		BBR_RS18710	0.16	-1.2
1,988,362	-		BBR_RS18710	0.17	+2.2
1,988,389	+		BBR_RS18710	0.19	-2.4
1,988,470	-		BBR_RS18710	0.27	+2.1
1,988,474	+		BBR_RS18710	0.27	+0.8
1,988,474	+		BBR_RS18710	0.27	+0.3
1,988,474	+		BBR_RS18710	0.27	-2.2
1,988,527	-		BBR_RS18710	0.32	+2.6
1,988,528	+		BBR_RS18710	0.32	+1.5
1,988,528	+		BBR_RS18710	0.32	-2.1
1,988,569	-		BBR_RS18710	0.36	+0.7
1,988,575	+		BBR_RS18710	0.37	+0.8
1,988,583	-		BBR_RS18710	0.37	-0.5
1,988,584	+		BBR_RS18710	0.38	+4.2
1,988,585	+		BBR_RS18710	0.38	+1.6
1,988,585	+		BBR_RS18710	0.38	+0.8
1,988,585	+		BBR_RS18710	0.38	+2.7
1,988,585	+		BBR_RS18710	0.38	+0.2
1,988,585	+		BBR_RS18710	0.38	+1.5
1,988,587	+		BBR_RS18710	0.38	-1.2
1,988,661	+		BBR_RS18710	0.45	-2.2
1,988,799	+		BBR_RS18710	0.58	+3.1
1,988,799	-		BBR_RS18710	0.58	-1.0
1,988,845	-		BBR_RS18710	0.62	+0.9
1,988,848	-		BBR_RS18710	0.62	+0.5
1,988,855	+		BBR_RS18710	0.63	+1.7
1,988,863	-		BBR_RS18710	0.64	+0.8
1,988,891	+		BBR_RS18710	0.66	+0.3
1,988,894	-		BBR_RS18710	0.67	+0.1
1,988,894	-		BBR_RS18710	0.67	+2.2
1,988,912	+		BBR_RS18710	0.68	+0.4
1,988,920	-		BBR_RS18710	0.69	-2.4
1,988,939	-		BBR_RS18710	0.71	-1.9
1,988,955	-		BBR_RS18710	0.72	+0.4
1,988,974	+		BBR_RS18710	0.74	+0.8
1,988,986	+		BBR_RS18710	0.75	+1.2
1,988,986	+		BBR_RS18710	0.75	-0.4
1,989,040	+		BBR_RS18710	0.80	-0.3
1,989,066	+		BBR_RS18710	0.83	+0.1
1,989,076	+		BBR_RS18710	0.84	-1.1
1,989,084	-		BBR_RS18710	0.84	+0.1
1,989,170	-				-0.1
1,989,170	-				-0.8
1,989,177	-				+1.5
1,989,216	+				+0.6
1,989,258	+				+1.1
1,989,258	+				-3.4
1,989,266	-				+1.6
1,989,266	-				-2.7
1,989,294	+				+1.7
1,989,324	+				+1.4
1,989,324	+				-0.1
1,989,332	-				+1.9
1,989,366	-				+0.1
1,989,366	-				+0.3
1,989,444	-				+2.7
1,989,457	+				+0.6
1,989,457	+				+3.0
1,989,481	+				-1.9
1,989,481	+				-2.2
1,989,481	+				+1.6
1,989,486	+				-0.9
1,989,486	+				-1.5
1,989,486	+				+1.8
1,989,496	+		BBR_RS18715	0.12	-0.2
1,989,515	+		BBR_RS18715	0.16	-3.3
1,989,522	+		BBR_RS18715	0.18	-3.0
1,989,535	+		BBR_RS18715	0.21	+1.0
1,989,541	+		BBR_RS18715	0.22	-1.1
1,989,541	+		BBR_RS18715	0.22	-0.3
1,989,541	+		BBR_RS18715	0.22	+1.9
1,989,565	+		BBR_RS18715	0.28	+0.6
1,989,566	+		BBR_RS18715	0.28	-0.5
1,989,585	+		BBR_RS18715	0.32	+0.9
1,989,585	+		BBR_RS18715	0.32	-1.0
1,989,591	+		BBR_RS18715	0.34	-1.8
1,989,601	+		BBR_RS18715	0.36	+0.4
1,989,605	+		BBR_RS18715	0.37	-2.6
1,989,651	+		BBR_RS18715	0.47	-2.3
1,989,656	+		BBR_RS18715	0.49	+0.4
1,989,657	+		BBR_RS18715	0.49	+0.4
1,989,661	+		BBR_RS18715	0.50	-1.2
1,989,670	+		BBR_RS18715	0.52	-2.9
1,989,725	+		BBR_RS18715	0.65	-0.8
1,989,735	+		BBR_RS18715	0.67	-2.6
1,989,735	+		BBR_RS18715	0.67	-0.2
1,989,740	+		BBR_RS18715	0.68	-1.4
1,989,761	+		BBR_RS18715	0.73	-2.2
1,989,761	+		BBR_RS18715	0.73	-1.4
1,989,761	+		BBR_RS18715	0.73	+0.2
1,989,782	+		BBR_RS18715	0.78	-2.2
1,989,793	+		BBR_RS18715	0.80	+1.5
1,989,798	+		BBR_RS18715	0.81	+0.5
1,989,798	+		BBR_RS18715	0.81	-0.1
1,989,798	+		BBR_RS18715	0.81	+0.8
1,989,798	+		BBR_RS18715	0.81	+0.1
1,989,807	+		BBR_RS18715	0.84	+0.0
1,989,807	+		BBR_RS18715	0.84	-1.3
1,989,819	+		BBR_RS18715	0.86	+1.8
1,989,829	+		BBR_RS18715	0.89	-1.4
1,989,881	+				-0.4
1,989,889	-				+1.6
1,989,894	-				+2.6
1,989,900	-				-2.1
1,989,915	-				-0.2
1,989,929	+				-2.1
1,989,936	+				+1.3
1,989,944	-				+1.6
1,989,954	+				+0.1
1,989,995	+				-2.5
1,990,014	+				+0.8
1,990,014	+				-3.2
1,990,014	+				+3.2
1,990,014	+				+0.1
1,990,014	-				-2.3
1,990,022	-				-3.4
1,990,022	-				-2.4
1,990,022	-				-1.8
1,990,022	-				+1.5
1,990,039	+				+4.1
1,990,054	+				-1.1
1,990,054	+				+0.6
1,990,054	+				+1.7
1,990,062	-				+1.1
1,990,067	-				+1.1
1,990,069	+				+2.1
1,990,069	+				-2.4
1,990,077	-				+1.3
1,990,086	+				+0.2
1,990,086	+				+0.0
1,990,086	+				-3.3
1,990,089	-				-0.2
1,990,092	-				+0.5
1,990,092	-				+2.5
1,990,092	-				+1.7
1,990,092	-				+1.5
1,990,092	-				+2.7
1,990,094	+				-2.3
1,990,102	-				+3.0
1,990,109	-				+2.9
1,990,147	-				-2.8
1,990,147	-				-2.6
1,990,148	+				-1.5
1,990,158	-				-0.4
1,990,164	-				+0.1
1,990,183	-				-2.0
1,990,202	+				-3.2
1,990,202	+				-2.9
1,990,202	-				-2.0
1,990,215	-				-1.1
1,990,228	+				+0.5
1,990,228	+				+0.8
1,990,228	+				-2.7
1,990,229	+				+3.3
1,990,233	+				+1.0
1,990,236	-				+2.4
1,990,237	-				+0.0
1,990,244	-				-1.0
1,990,249	+				+1.5