Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14115

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14105 and BBR_RS14110 are separated by 48 nucleotidesBBR_RS14110 and BBR_RS14115 overlap by 11 nucleotidesBBR_RS14115 and BBR_RS14120 overlap by 4 nucleotides BBR_RS14105: BBR_RS14105 - N-acetyltransferase, at 940,626 to 941,123 _RS14105 BBR_RS14110: BBR_RS14110 - aminoacyl-tRNA hydrolase, at 941,172 to 941,771 _RS14110 BBR_RS14115: BBR_RS14115 - transcription-repair coupling factor, at 941,761 to 945,351 _RS14115 BBR_RS14120: BBR_RS14120 - aldo/keto reductase, at 945,348 to 946,259 _RS14120 Position (kb) 941 942 943 944 945 946Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 940.773 kb on + strand, within BBR_RS14105at 940.813 kb on - strand, within BBR_RS14105at 940.844 kb on + strand, within BBR_RS14105at 940.902 kb on + strand, within BBR_RS14105at 940.902 kb on + strand, within BBR_RS14105at 940.915 kb on - strand, within BBR_RS14105at 940.915 kb on - strand, within BBR_RS14105at 940.917 kb on - strand, within BBR_RS14105at 940.919 kb on + strand, within BBR_RS14105at 940.970 kb on - strand, within BBR_RS14105at 940.977 kb on + strand, within BBR_RS14105at 940.977 kb on + strand, within BBR_RS14105at 941.024 kb on - strand, within BBR_RS14105at 941.043 kb on - strand, within BBR_RS14105at 941.053 kb on - strand, within BBR_RS14105at 941.053 kb on - strand, within BBR_RS14105at 941.097 kb on - strandat 941.107 kb on - strandat 941.107 kb on - strandat 941.734 kb on + strandat 941.844 kb on + strandat 941.852 kb on - strandat 941.867 kb on - strandat 941.892 kb on - strandat 941.964 kb on - strandat 941.964 kb on - strandat 941.980 kb on + strandat 941.988 kb on - strandat 942.073 kb on - strandat 942.098 kb on + strandat 942.106 kb on - strandat 942.139 kb on - strand, within BBR_RS14115at 942.182 kb on + strand, within BBR_RS14115at 942.185 kb on - strand, within BBR_RS14115at 942.192 kb on + strand, within BBR_RS14115at 942.236 kb on - strand, within BBR_RS14115at 942.267 kb on + strand, within BBR_RS14115at 942.269 kb on + strand, within BBR_RS14115at 942.276 kb on - strand, within BBR_RS14115at 942.283 kb on - strand, within BBR_RS14115at 942.313 kb on - strand, within BBR_RS14115at 942.358 kb on + strand, within BBR_RS14115at 942.426 kb on + strand, within BBR_RS14115at 942.426 kb on + strand, within BBR_RS14115at 942.434 kb on - strand, within BBR_RS14115at 942.434 kb on - strand, within BBR_RS14115at 942.503 kb on + strand, within BBR_RS14115at 942.503 kb on + strand, within BBR_RS14115at 942.503 kb on + strand, within BBR_RS14115at 942.503 kb on + strand, within BBR_RS14115at 942.511 kb on - strand, within BBR_RS14115at 942.526 kb on - strand, within BBR_RS14115at 942.526 kb on - strand, within BBR_RS14115at 942.526 kb on - strand, within BBR_RS14115at 942.548 kb on - strand, within BBR_RS14115at 942.565 kb on + strand, within BBR_RS14115at 942.601 kb on + strand, within BBR_RS14115at 942.601 kb on + strand, within BBR_RS14115at 942.609 kb on - strand, within BBR_RS14115at 942.623 kb on + strand, within BBR_RS14115at 942.702 kb on - strand, within BBR_RS14115at 942.705 kb on + strand, within BBR_RS14115at 942.753 kb on - strand, within BBR_RS14115at 942.769 kb on - strand, within BBR_RS14115at 942.923 kb on + strand, within BBR_RS14115at 942.973 kb on - strand, within BBR_RS14115at 942.979 kb on - strand, within BBR_RS14115at 942.985 kb on + strand, within BBR_RS14115at 942.993 kb on - strand, within BBR_RS14115at 943.040 kb on + strand, within BBR_RS14115at 943.082 kb on - strand, within BBR_RS14115at 943.105 kb on + strand, within BBR_RS14115at 943.114 kb on + strand, within BBR_RS14115at 943.114 kb on + strand, within BBR_RS14115at 943.116 kb on + strand, within BBR_RS14115at 943.157 kb on + strand, within BBR_RS14115at 943.237 kb on + strand, within BBR_RS14115at 943.237 kb on + strand, within BBR_RS14115at 943.238 kb on + strand, within BBR_RS14115at 943.245 kb on - strand, within BBR_RS14115at 943.247 kb on + strand, within BBR_RS14115at 943.296 kb on - strand, within BBR_RS14115at 943.303 kb on - strand, within BBR_RS14115at 943.327 kb on + strand, within BBR_RS14115at 943.333 kb on + strand, within BBR_RS14115at 943.333 kb on + strand, within BBR_RS14115at 943.336 kb on - strand, within BBR_RS14115at 943.472 kb on + strand, within BBR_RS14115at 943.516 kb on + strand, within BBR_RS14115at 943.524 kb on + strand, within BBR_RS14115at 943.526 kb on - strand, within BBR_RS14115at 943.527 kb on + strand, within BBR_RS14115at 943.527 kb on + strand, within BBR_RS14115at 943.563 kb on + strand, within BBR_RS14115at 943.614 kb on + strand, within BBR_RS14115at 943.711 kb on + strand, within BBR_RS14115at 943.716 kb on + strand, within BBR_RS14115at 943.722 kb on - strand, within BBR_RS14115at 943.757 kb on - strand, within BBR_RS14115at 943.786 kb on + strand, within BBR_RS14115at 943.837 kb on + strand, within BBR_RS14115at 943.863 kb on + strand, within BBR_RS14115at 943.905 kb on - strand, within BBR_RS14115at 944.027 kb on - strand, within BBR_RS14115at 944.072 kb on - strand, within BBR_RS14115at 944.072 kb on - strand, within BBR_RS14115at 944.131 kb on + strand, within BBR_RS14115at 944.131 kb on + strand, within BBR_RS14115at 944.212 kb on + strand, within BBR_RS14115at 944.229 kb on + strand, within BBR_RS14115at 944.257 kb on + strand, within BBR_RS14115at 944.257 kb on + strand, within BBR_RS14115at 944.262 kb on + strand, within BBR_RS14115at 944.265 kb on - strand, within BBR_RS14115at 944.265 kb on - strand, within BBR_RS14115at 944.275 kb on - strand, within BBR_RS14115at 944.312 kb on + strand, within BBR_RS14115at 944.318 kb on - strand, within BBR_RS14115at 944.344 kb on + strand, within BBR_RS14115at 944.344 kb on + strand, within BBR_RS14115at 944.344 kb on + strand, within BBR_RS14115at 944.354 kb on - strand, within BBR_RS14115at 944.354 kb on - strand, within BBR_RS14115at 944.416 kb on + strand, within BBR_RS14115at 944.433 kb on + strand, within BBR_RS14115at 944.488 kb on + strand, within BBR_RS14115at 944.637 kb on - strand, within BBR_RS14115at 944.652 kb on - strand, within BBR_RS14115at 944.655 kb on + strand, within BBR_RS14115at 944.701 kb on + strand, within BBR_RS14115at 944.701 kb on + strand, within BBR_RS14115at 944.755 kb on - strand, within BBR_RS14115at 944.799 kb on + strand, within BBR_RS14115at 944.821 kb on + strand, within BBR_RS14115at 945.069 kb on + strandat 945.097 kb on - strandat 945.132 kb on + strandat 945.140 kb on - strandat 945.163 kb on - strandat 945.223 kb on + strandat 945.274 kb on + strandat 945.276 kb on - strandat 945.293 kb on + strandat 945.305 kb on + strandat 945.364 kb on + strandat 945.456 kb on + strand, within BBR_RS14120at 945.464 kb on - strand, within BBR_RS14120at 945.472 kb on - strand, within BBR_RS14120at 945.474 kb on + strand, within BBR_RS14120at 945.474 kb on + strand, within BBR_RS14120at 945.479 kb on + strand, within BBR_RS14120at 945.546 kb on + strand, within BBR_RS14120at 945.614 kb on + strand, within BBR_RS14120at 945.632 kb on + strand, within BBR_RS14120at 945.657 kb on + strand, within BBR_RS14120at 945.657 kb on + strand, within BBR_RS14120at 945.665 kb on - strand, within BBR_RS14120at 945.737 kb on + strand, within BBR_RS14120at 945.782 kb on - strand, within BBR_RS14120at 945.797 kb on - strand, within BBR_RS14120at 945.797 kb on - strand, within BBR_RS14120at 945.812 kb on - strand, within BBR_RS14120at 945.840 kb on + strand, within BBR_RS14120at 945.845 kb on + strand, within BBR_RS14120at 945.845 kb on + strand, within BBR_RS14120at 945.853 kb on - strand, within BBR_RS14120at 945.943 kb on + strand, within BBR_RS14120at 945.953 kb on + strand, within BBR_RS14120at 945.979 kb on + strand, within BBR_RS14120at 945.979 kb on + strand, within BBR_RS14120at 945.979 kb on + strand, within BBR_RS14120at 945.987 kb on - strand, within BBR_RS14120at 945.989 kb on + strand, within BBR_RS14120at 946.101 kb on - strand, within BBR_RS14120at 946.101 kb on - strand, within BBR_RS14120at 946.101 kb on - strand, within BBR_RS14120at 946.125 kb on - strand, within BBR_RS14120at 946.131 kb on - strand, within BBR_RS14120at 946.268 kb on + strandat 946.337 kb on + strandat 946.345 kb on - strandat 946.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse18; day3
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940,773 + BBR_RS14105 0.30 -2.1
940,813 - BBR_RS14105 0.38 -1.8
940,844 + BBR_RS14105 0.44 +1.0
940,902 + BBR_RS14105 0.55 -0.1
940,902 + BBR_RS14105 0.55 +1.1
940,915 - BBR_RS14105 0.58 +2.3
940,915 - BBR_RS14105 0.58 -1.8
940,917 - BBR_RS14105 0.58 +2.2
940,919 + BBR_RS14105 0.59 +1.9
940,970 - BBR_RS14105 0.69 -0.1
940,977 + BBR_RS14105 0.70 +1.7
940,977 + BBR_RS14105 0.70 +0.1
941,024 - BBR_RS14105 0.80 -2.0
941,043 - BBR_RS14105 0.84 -3.3
941,053 - BBR_RS14105 0.86 -2.7
941,053 - BBR_RS14105 0.86 +3.2
941,097 - +1.4
941,107 - -2.3
941,107 - +2.2
941,734 + +1.3
941,844 + +1.6
941,852 - +1.9
941,867 - +0.8
941,892 - +1.7
941,964 - +0.3
941,964 - -0.5
941,980 + +1.3
941,988 - -0.7
942,073 - +0.5
942,098 + +0.3
942,106 - +2.5
942,139 - BBR_RS14115 0.11 -0.7
942,182 + BBR_RS14115 0.12 -2.2
942,185 - BBR_RS14115 0.12 -2.3
942,192 + BBR_RS14115 0.12 +1.4
942,236 - BBR_RS14115 0.13 -2.6
942,267 + BBR_RS14115 0.14 +1.6
942,269 + BBR_RS14115 0.14 -2.6
942,276 - BBR_RS14115 0.14 +2.0
942,283 - BBR_RS14115 0.15 +2.6
942,313 - BBR_RS14115 0.15 +2.3
942,358 + BBR_RS14115 0.17 +0.9
942,426 + BBR_RS14115 0.19 +0.7
942,426 + BBR_RS14115 0.19 +1.5
942,434 - BBR_RS14115 0.19 +1.4
942,434 - BBR_RS14115 0.19 +1.6
942,503 + BBR_RS14115 0.21 +1.1
942,503 + BBR_RS14115 0.21 -2.0
942,503 + BBR_RS14115 0.21 -2.2
942,503 + BBR_RS14115 0.21 -1.8
942,511 - BBR_RS14115 0.21 +2.2
942,526 - BBR_RS14115 0.21 -0.5
942,526 - BBR_RS14115 0.21 +1.8
942,526 - BBR_RS14115 0.21 -0.1
942,548 - BBR_RS14115 0.22 -1.3
942,565 + BBR_RS14115 0.22 +2.3
942,601 + BBR_RS14115 0.23 -1.9
942,601 + BBR_RS14115 0.23 -1.5
942,609 - BBR_RS14115 0.24 -0.6
942,623 + BBR_RS14115 0.24 -1.5
942,702 - BBR_RS14115 0.26 +2.7
942,705 + BBR_RS14115 0.26 +1.3
942,753 - BBR_RS14115 0.28 +1.6
942,769 - BBR_RS14115 0.28 -1.7
942,923 + BBR_RS14115 0.32 +2.0
942,973 - BBR_RS14115 0.34 -1.7
942,979 - BBR_RS14115 0.34 +1.1
942,985 + BBR_RS14115 0.34 -2.3
942,993 - BBR_RS14115 0.34 -0.8
943,040 + BBR_RS14115 0.36 +3.5
943,082 - BBR_RS14115 0.37 +0.6
943,105 + BBR_RS14115 0.37 -0.2
943,114 + BBR_RS14115 0.38 -2.2
943,114 + BBR_RS14115 0.38 -0.1
943,116 + BBR_RS14115 0.38 -1.4
943,157 + BBR_RS14115 0.39 +1.7
943,237 + BBR_RS14115 0.41 +0.5
943,237 + BBR_RS14115 0.41 +2.4
943,238 + BBR_RS14115 0.41 -0.7
943,245 - BBR_RS14115 0.41 +1.8
943,247 + BBR_RS14115 0.41 +0.9
943,296 - BBR_RS14115 0.43 +1.5
943,303 - BBR_RS14115 0.43 -1.5
943,327 + BBR_RS14115 0.44 +1.7
943,333 + BBR_RS14115 0.44 -0.7
943,333 + BBR_RS14115 0.44 -0.0
943,336 - BBR_RS14115 0.44 -2.0
943,472 + BBR_RS14115 0.48 +1.5
943,516 + BBR_RS14115 0.49 -0.6
943,524 + BBR_RS14115 0.49 +1.6
943,526 - BBR_RS14115 0.49 -0.6
943,527 + BBR_RS14115 0.49 -2.7
943,527 + BBR_RS14115 0.49 -3.0
943,563 + BBR_RS14115 0.50 +0.6
943,614 + BBR_RS14115 0.52 -0.6
943,711 + BBR_RS14115 0.54 -2.6
943,716 + BBR_RS14115 0.54 -2.9
943,722 - BBR_RS14115 0.55 -0.1
943,757 - BBR_RS14115 0.56 +1.0
943,786 + BBR_RS14115 0.56 +1.6
943,837 + BBR_RS14115 0.58 -1.1
943,863 + BBR_RS14115 0.59 -0.2
943,905 - BBR_RS14115 0.60 -1.6
944,027 - BBR_RS14115 0.63 +1.5
944,072 - BBR_RS14115 0.64 -1.6
944,072 - BBR_RS14115 0.64 +0.9
944,131 + BBR_RS14115 0.66 -2.1
944,131 + BBR_RS14115 0.66 +1.6
944,212 + BBR_RS14115 0.68 -0.7
944,229 + BBR_RS14115 0.69 -2.0
944,257 + BBR_RS14115 0.70 -2.3
944,257 + BBR_RS14115 0.70 -2.5
944,262 + BBR_RS14115 0.70 -2.5
944,265 - BBR_RS14115 0.70 +0.6
944,265 - BBR_RS14115 0.70 -1.7
944,275 - BBR_RS14115 0.70 -1.8
944,312 + BBR_RS14115 0.71 +0.8
944,318 - BBR_RS14115 0.71 +2.1
944,344 + BBR_RS14115 0.72 +0.6
944,344 + BBR_RS14115 0.72 +0.5
944,344 + BBR_RS14115 0.72 +1.1
944,354 - BBR_RS14115 0.72 -1.5
944,354 - BBR_RS14115 0.72 +0.0
944,416 + BBR_RS14115 0.74 -0.4
944,433 + BBR_RS14115 0.74 -2.4
944,488 + BBR_RS14115 0.76 +5.2
944,637 - BBR_RS14115 0.80 -0.6
944,652 - BBR_RS14115 0.81 +3.2
944,655 + BBR_RS14115 0.81 -1.9
944,701 + BBR_RS14115 0.82 -1.4
944,701 + BBR_RS14115 0.82 +1.0
944,755 - BBR_RS14115 0.83 +0.2
944,799 + BBR_RS14115 0.85 -0.5
944,821 + BBR_RS14115 0.85 +0.7
945,069 + +1.6
945,097 - +1.3
945,132 + +1.9
945,140 - -1.7
945,163 - -0.3
945,223 + -1.7
945,274 + +1.1
945,276 - +1.7
945,293 + +0.4
945,305 + -1.5
945,364 + +1.6
945,456 + BBR_RS14120 0.12 -2.2
945,464 - BBR_RS14120 0.13 +0.9
945,472 - BBR_RS14120 0.14 -0.2
945,474 + BBR_RS14120 0.14 +1.8
945,474 + BBR_RS14120 0.14 +3.4
945,479 + BBR_RS14120 0.14 +1.1
945,546 + BBR_RS14120 0.22 -1.0
945,614 + BBR_RS14120 0.29 -0.4
945,632 + BBR_RS14120 0.31 -2.6
945,657 + BBR_RS14120 0.34 -2.2
945,657 + BBR_RS14120 0.34 -0.5
945,665 - BBR_RS14120 0.35 -1.9
945,737 + BBR_RS14120 0.43 +1.4
945,782 - BBR_RS14120 0.48 -1.3
945,797 - BBR_RS14120 0.49 -0.3
945,797 - BBR_RS14120 0.49 +1.2
945,812 - BBR_RS14120 0.51 +2.5
945,840 + BBR_RS14120 0.54 +1.0
945,845 + BBR_RS14120 0.54 +1.4
945,845 + BBR_RS14120 0.54 +1.2
945,853 - BBR_RS14120 0.55 +1.6
945,943 + BBR_RS14120 0.65 +3.1
945,953 + BBR_RS14120 0.66 +1.8
945,979 + BBR_RS14120 0.69 +1.2
945,979 + BBR_RS14120 0.69 +0.5
945,979 + BBR_RS14120 0.69 +1.1
945,987 - BBR_RS14120 0.70 -1.6
945,989 + BBR_RS14120 0.70 +0.8
946,101 - BBR_RS14120 0.83 +0.8
946,101 - BBR_RS14120 0.83 +0.4
946,101 - BBR_RS14120 0.83 -0.2
946,125 - BBR_RS14120 0.85 -1.8
946,131 - BBR_RS14120 0.86 +1.0
946,268 + -0.8
946,337 + +1.1
946,345 - +0.6
946,346 - +1.0

Or see this region's nucleotide sequence