Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006083

Experiment: Laminarin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Laminarin 10 g/L (C)
2,416,445	+		ABIE53_006082	0.38	+1.1
2,416,446	-		ABIE53_006082	0.38	+1.5
2,416,564	-		ABIE53_006082	0.48	-1.1
2,416,579	+		ABIE53_006082	0.49	+1.5
2,416,580	-		ABIE53_006082	0.49	-0.5
2,416,720	+		ABIE53_006082	0.60	-1.9
2,416,720	+		ABIE53_006082	0.60	+0.1
2,416,720	+		ABIE53_006082	0.60	-2.1
2,416,720	+		ABIE53_006082	0.60	+1.1
2,416,721	-		ABIE53_006082	0.60	+1.1
2,416,721	-		ABIE53_006082	0.60	+0.5
2,416,724	+		ABIE53_006082	0.60	+1.1
2,416,724	+		ABIE53_006082	0.60	-1.3
2,416,836	+		ABIE53_006082	0.69	+0.7
2,416,837	-		ABIE53_006082	0.70	+1.1
2,416,884	-		ABIE53_006082	0.73	+1.1
2,416,914	+		ABIE53_006082	0.76	+0.7
2,416,914	+		ABIE53_006082	0.76	-0.5
2,416,915	-		ABIE53_006082	0.76	+1.1
2,416,915	-		ABIE53_006082	0.76	-0.9
2,417,098	-				-1.7
2,417,201	+				-0.5
2,417,201	+				+1.1
2,417,220	+				-0.5
2,417,290	-				+1.1
2,417,310	+				-0.9
2,417,343	-				-1.1
2,417,348	+				+0.2
2,417,349	-				+1.1
2,417,391	-				+1.1
2,417,597	+		ABIE53_006083	0.13	+1.1
2,417,597	+		ABIE53_006083	0.13	-0.5
2,417,645	-		ABIE53_006083	0.15	+0.1
2,417,670	+		ABIE53_006083	0.16	+1.1
2,417,670	+		ABIE53_006083	0.16	-2.5
2,417,671	-		ABIE53_006083	0.16	+0.1
2,417,671	-		ABIE53_006083	0.16	+1.1
2,417,673	+		ABIE53_006083	0.16	+1.1
2,417,673	+		ABIE53_006083	0.16	+1.1
2,417,674	-		ABIE53_006083	0.16	+1.1
2,417,674	-		ABIE53_006083	0.16	+1.1
2,417,709	+		ABIE53_006083	0.18	-2.1
2,417,709	+		ABIE53_006083	0.18	+1.1
2,417,786	+		ABIE53_006083	0.21	-1.5
2,417,786	+		ABIE53_006083	0.21	-2.0
2,417,787	-		ABIE53_006083	0.21	-3.5
2,417,875	+		ABIE53_006083	0.25	-0.5
2,417,961	+		ABIE53_006083	0.29	+0.1
2,418,092	+		ABIE53_006083	0.35	-0.5
2,418,092	+		ABIE53_006083	0.35	-1.3
2,418,093	-		ABIE53_006083	0.35	+1.1
2,418,093	-		ABIE53_006083	0.35	-0.9
2,418,151	+		ABIE53_006083	0.38	+1.1
2,418,151	+		ABIE53_006083	0.38	-1.4
2,418,152	-		ABIE53_006083	0.38	+1.1
2,418,226	-		ABIE53_006083	0.41	+1.1
2,418,250	+		ABIE53_006083	0.42	-1.7
2,418,251	-		ABIE53_006083	0.42	+1.1
2,418,338	+		ABIE53_006083	0.46	-0.7
2,418,339	-		ABIE53_006083	0.46	+1.1
2,418,349	-		ABIE53_006083	0.46	-0.5
2,418,569	+		ABIE53_006083	0.56	-2.6
2,418,569	+		ABIE53_006083	0.56	+1.1
2,418,626	+		ABIE53_006083	0.59	-2.7
2,418,626	+		ABIE53_006083	0.59	+2.7
2,418,627	-		ABIE53_006083	0.59	+0.7
2,418,627	-		ABIE53_006083	0.59	+0.1
2,418,627	-		ABIE53_006083	0.59	+1.1
2,418,670	+		ABIE53_006083	0.61	+1.1
2,418,737	+		ABIE53_006083	0.64	+1.8
2,418,738	-		ABIE53_006083	0.64	-1.8
2,418,990	-		ABIE53_006083	0.75	+2.1
2,419,025	+		ABIE53_006083	0.76	+1.1
2,419,026	-		ABIE53_006083	0.76	-0.5
2,419,219	+		ABIE53_006083	0.85	-0.9
2,419,220	-		ABIE53_006083	0.85	-2.5
2,419,220	-		ABIE53_006083	0.85	+1.1
2,419,220	-		ABIE53_006083	0.85	-0.5
2,419,223	+		ABIE53_006083	0.85	+1.4
2,419,223	+		ABIE53_006083	0.85	+1.1
2,419,224	-		ABIE53_006083	0.85	+1.1
2,419,317	+		ABIE53_006083	0.89	+0.1
2,419,392	-				-4.0
2,419,446	+				+1.1
2,419,447	-				-1.3
2,419,447	-				-0.9
2,419,456	+				+0.2
2,419,557	+				+1.1
2,419,649	+				+0.1
2,419,650	-				-0.9
2,419,650	-				-1.3
2,419,650	-				-0.2
2,419,787	+				-0.6
2,419,787	+				-2.7
2,419,788	-				+0.1
2,419,788	-				+0.1
2,419,788	-				-2.7
2,419,852	-				-0.2
2,419,852	-				+0.1
2,419,852	-				+1.1
2,419,852	-				+1.1
2,419,930	+				-0.5
2,419,930	+				+1.1
2,419,931	-				+0.1
2,419,989	-				+1.3
2,420,051	+				+0.1
2,420,051	+				+1.1
2,420,078	+				-0.3
2,420,079	-				+2.7
2,420,103	-				-0.5
2,420,143	-				-0.9
2,420,143	-				+1.5
2,420,159	-				+1.1
2,420,175	+				-0.5
2,420,176	+				-2.1
2,420,229	+		ABIE53_006084	0.14	-0.5
2,420,229	+		ABIE53_006084	0.14	+0.5
2,420,230	-		ABIE53_006084	0.14	+1.1
2,420,324	-		ABIE53_006084	0.24	+1.1
2,420,324	-		ABIE53_006084	0.24	+1.1
2,420,324	-		ABIE53_006084	0.24	+1.1
2,420,429	-		ABIE53_006084	0.35	+0.7
2,420,432	+		ABIE53_006084	0.35	+0.1
2,420,432	+		ABIE53_006084	0.35	-0.5
2,420,433	-		ABIE53_006084	0.35	-2.6
2,420,433	-		ABIE53_006084	0.35	+1.1
2,420,433	-		ABIE53_006084	0.35	-1.3
2,420,434	+		ABIE53_006084	0.35	-2.1
2,420,446	+		ABIE53_006084	0.36	+0.1