Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005809

Experiment: Laminarin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Laminarin 10 g/L (C)
2,111,393	-		ABIE53_005808	0.37	+2.1
2,111,517	+		ABIE53_005808	0.54	-0.9
2,111,690	+		ABIE53_005808	0.77	-3.9
2,111,690	+		ABIE53_005808	0.77	+1.1
2,111,774	+		ABIE53_005808	0.88	-0.9
2,111,774	+		ABIE53_005808	0.88	-2.9
2,111,775	-		ABIE53_005808	0.89	+2.7
2,111,775	-		ABIE53_005808	0.89	+0.1
2,111,775	-		ABIE53_005808	0.89	-0.9
2,111,789	+				+1.1
2,111,790	-				+1.1
2,111,802	+				+0.1
2,111,802	+				+1.1
2,111,802	+				+0.1
2,111,803	-				+1.1
2,111,803	-				+1.1
2,111,837	+				-0.9
2,111,838	-				+1.1
2,111,891	-				+0.1
2,111,891	-				+0.1
2,111,910	+				+3.1
2,111,911	-				-2.1
2,111,911	-				-0.7
2,111,964	+				-0.9
2,111,965	-				+1.1
2,112,003	-				+2.1
2,112,009	+				+1.1
2,112,010	-				-0.5
2,112,069	+				+1.1
2,112,069	+				+1.1
2,112,069	+				+1.1
2,112,069	+				+1.1
2,112,069	+				+2.1
2,112,070	-				+1.1
2,112,070	-				+0.1
2,112,157	-				-1.7
2,112,190	-				+0.1
2,112,226	+				-0.5
2,112,226	+				+0.1
2,112,227	-				+0.1
2,112,227	-				+2.1
2,112,418	+				-2.6
2,112,418	+				+0.1
2,112,419	-				+1.1
2,112,419	-				+1.1
2,112,435	+				-0.9
2,112,436	-				+0.6
2,112,437	+				+1.1
2,112,437	+				-1.4
2,112,438	-				-0.5
2,112,525	+		ABIE53_005809	0.12	-2.4
2,112,526	-		ABIE53_005809	0.12	-2.2
2,112,861	+		ABIE53_005809	0.34	-1.2
2,112,861	+		ABIE53_005809	0.34	-0.9
2,112,861	+		ABIE53_005809	0.34	+1.1
2,112,862	-		ABIE53_005809	0.34	+1.1
2,112,862	-		ABIE53_005809	0.34	-0.9
2,112,863	+		ABIE53_005809	0.34	+0.1
2,112,864	-		ABIE53_005809	0.34	-2.4
2,112,899	-		ABIE53_005809	0.37	+1.7
2,112,931	+		ABIE53_005809	0.39	+2.1
2,112,931	+		ABIE53_005809	0.39	+0.1
2,112,932	-		ABIE53_005809	0.39	-0.2
2,113,014	+		ABIE53_005809	0.44	+1.1
2,113,014	+		ABIE53_005809	0.44	+1.1
2,113,014	+		ABIE53_005809	0.44	-1.0
2,113,014	+		ABIE53_005809	0.44	+1.1
2,113,014	+		ABIE53_005809	0.44	-1.1
2,113,015	-		ABIE53_005809	0.44	-0.2
2,113,015	-		ABIE53_005809	0.44	-1.5
2,113,058	+		ABIE53_005809	0.47	-0.5
2,113,091	+		ABIE53_005809	0.49	+1.1
2,113,091	+		ABIE53_005809	0.49	-2.1
2,113,092	-		ABIE53_005809	0.49	+1.1
2,113,092	-		ABIE53_005809	0.49	+1.1
2,113,131	+		ABIE53_005809	0.52	+1.1
2,113,132	-		ABIE53_005809	0.52	+0.1
2,113,132	-		ABIE53_005809	0.52	-2.9
2,113,132	-		ABIE53_005809	0.52	+1.7
2,113,132	-		ABIE53_005809	0.52	+0.1
2,113,170	+		ABIE53_005809	0.54	+0.1
2,113,172	+		ABIE53_005809	0.54	-1.9
2,113,173	-		ABIE53_005809	0.55	+1.1
2,113,173	-		ABIE53_005809	0.55	-1.7
2,113,362	-		ABIE53_005809	0.67	+1.1
2,113,362	-		ABIE53_005809	0.67	+1.1
2,113,386	+		ABIE53_005809	0.68	+2.1
2,113,386	+		ABIE53_005809	0.68	+1.1
2,113,386	+		ABIE53_005809	0.68	-1.2
2,113,387	-		ABIE53_005809	0.68	-0.8
2,113,388	+		ABIE53_005809	0.69	-0.2
2,113,388	+		ABIE53_005809	0.69	+1.1
2,113,389	-		ABIE53_005809	0.69	+1.1
2,113,397	+		ABIE53_005809	0.69	+1.7
2,113,398	-		ABIE53_005809	0.69	-3.5
2,113,398	-		ABIE53_005809	0.69	-2.4
2,113,398	-		ABIE53_005809	0.69	+3.1
2,113,419	-		ABIE53_005809	0.71	+1.1
2,113,419	-		ABIE53_005809	0.71	+1.1
2,113,419	-		ABIE53_005809	0.71	-0.5
2,113,419	-		ABIE53_005809	0.71	-2.8
2,113,419	-		ABIE53_005809	0.71	-1.5
2,113,577	+		ABIE53_005809	0.81	+0.1
2,113,577	+		ABIE53_005809	0.81	-2.2
2,113,577	+		ABIE53_005809	0.81	-1.2
2,113,578	-		ABIE53_005809	0.81	-1.2
2,113,578	-		ABIE53_005809	0.81	+1.1
2,113,672	-		ABIE53_005809	0.87	+1.1
2,113,681	+		ABIE53_005809	0.88	+1.1
2,113,681	+		ABIE53_005809	0.88	+1.1
2,113,681	+		ABIE53_005809	0.88	+1.1
2,113,681	+		ABIE53_005809	0.88	-0.5
2,113,681	+		ABIE53_005809	0.88	+1.1
2,113,682	-		ABIE53_005809	0.88	-0.5
2,113,682	-		ABIE53_005809	0.88	-1.5
2,113,685	+		ABIE53_005809	0.88	+0.1
2,113,685	+		ABIE53_005809	0.88	+1.1
2,113,685	+		ABIE53_005809	0.88	-0.5
2,113,685	+		ABIE53_005809	0.88	-0.9
2,113,686	-		ABIE53_005809	0.88	+2.7
2,113,686	-		ABIE53_005809	0.88	+1.1
2,113,686	-		ABIE53_005809	0.88	+1.1
2,113,722	+				+1.1
2,113,722	+				+2.1
2,113,723	-				+3.4
2,113,723	-				+0.1
2,113,778	+				+2.4
2,113,779	-				+1.1
2,113,791	+				-0.9
2,113,792	-				+0.1
2,113,859	+				+1.6
2,113,924	+				-1.4
2,113,925	-				+2.1
2,113,943	+				-0.1
2,113,943	+				+1.1
2,113,943	+				+0.1
2,113,943	+				-1.6
2,113,944	-				+0.1
2,113,944	-				+0.1
2,113,967	+				-1.2
2,113,967	+				-1.4
2,114,076	+				+1.1
2,114,127	+				+2.7
2,114,128	-				+2.7
2,114,128	-				+0.1
2,114,128	-				+1.1
2,114,128	-				-1.6
2,114,195	+		ABIE53_005810	0.10	+1.1
2,114,195	+		ABIE53_005810	0.10	+2.7
2,114,195	+		ABIE53_005810	0.10	+0.3
2,114,195	+		ABIE53_005810	0.10	+2.7
2,114,195	+		ABIE53_005810	0.10	-2.6
2,114,195	+		ABIE53_005810	0.10	-0.5
2,114,196	-		ABIE53_005810	0.10	+1.1
2,114,196	-		ABIE53_005810	0.10	+0.5
2,114,196	-		ABIE53_005810	0.10	-2.1
2,114,199	+		ABIE53_005810	0.11	-0.9
2,114,199	+		ABIE53_005810	0.11	+1.1
2,114,199	+		ABIE53_005810	0.11	+1.7
2,114,199	+		ABIE53_005810	0.11	+1.1
2,114,199	+		ABIE53_005810	0.11	-1.9
2,114,199	+		ABIE53_005810	0.11	-2.1
2,114,199	+		ABIE53_005810	0.11	+0.1
2,114,199	+		ABIE53_005810	0.11	+1.1
2,114,200	-		ABIE53_005810	0.11	+0.8
2,114,200	-		ABIE53_005810	0.11	+2.7
2,114,200	-		ABIE53_005810	0.11	+0.1
2,114,200	-		ABIE53_005810	0.11	+1.1
2,114,200	-		ABIE53_005810	0.11	+1.1
2,114,200	-		ABIE53_005810	0.11	+2.1
2,114,233	+		ABIE53_005810	0.13	-1.9
2,114,233	+		ABIE53_005810	0.13	+1.1
2,114,233	+		ABIE53_005810	0.13	-0.9
2,114,341	-		ABIE53_005810	0.18	+1.1
2,114,359	-		ABIE53_005810	0.19	+1.1
2,114,441	-		ABIE53_005810	0.24	+1.1
2,114,606	+		ABIE53_005810	0.33	+1.7
2,114,607	-		ABIE53_005810	0.33	-1.7
2,114,607	-		ABIE53_005810	0.33	-0.5
2,114,607	-		ABIE53_005810	0.33	+0.1
2,114,607	-		ABIE53_005810	0.33	+1.1
2,114,607	-		ABIE53_005810	0.33	+1.1
2,114,607	-		ABIE53_005810	0.33	+2.1
2,114,716	+		ABIE53_005810	0.39	+1.1
2,114,717	-		ABIE53_005810	0.39	-2.2
2,114,717	-		ABIE53_005810	0.39	+0.8
2,114,812	+		ABIE53_005810	0.44	-0.9
2,114,813	-		ABIE53_005810	0.44	+0.1