Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001532

Experiment: Laminarin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Laminarin 10 g/L (C)
1,709,568	+				-2.0
1,709,732	+				-1.0
1,709,732	+				+1.0
1,709,732	+				-3.4
1,709,732	+				+2.6
1,709,758	-				+0.0
1,709,758	-				-1.5
1,709,765	+				-0.5
1,709,766	-				+1.6
1,709,768	+				-2.0
1,709,768	+				+0.0
1,709,768	+				+1.0
1,709,769	-				-2.3
1,709,769	-				+2.0
1,709,819	-				-2.8
1,709,821	+				-0.8
1,709,822	-				+0.2
1,709,822	-				+0.2
1,709,890	+				+1.0
1,709,891	-				-0.1
1,709,891	-				-0.9
1,709,929	+				+0.9
1,709,929	+				-2.4
1,709,929	+				+1.0
1,709,929	+				+0.0
1,709,934	+				-1.3
1,709,934	+				+1.0
1,709,935	-				-1.0
1,709,938	+				-2.3
1,709,938	+				-0.5
1,709,939	-				+2.6
1,710,083	-		ABIE53_001530	0.58	-0.4
1,710,083	-		ABIE53_001530	0.58	+0.0
1,710,149	+		ABIE53_001530	0.82	-3.0
1,710,149	+		ABIE53_001530	0.82	-0.9
1,710,150	-		ABIE53_001530	0.83	-0.5
1,710,175	+				+1.0
1,710,176	-				+0.3
1,710,176	-				+0.7
1,710,195	-				+2.0
1,710,213	+				-0.2
1,710,249	+				-2.1
1,710,288	+				+1.6
1,710,288	+				+2.6
1,710,288	+				-2.3
1,710,289	-				+1.0
1,710,289	-				+2.0
1,710,289	-				-3.0
1,710,289	-				+1.0
1,710,289	-				+0.0
1,710,293	+				+1.0
1,710,294	+				-3.3
1,710,294	+				-1.5
1,710,294	+				-2.1
1,710,294	+				+1.0
1,710,294	+				-2.1
1,710,295	-				-2.2
1,710,295	-				-2.1
1,710,295	-				+1.1
1,710,295	-				+1.0
1,710,295	-				+2.6
1,710,295	-				-1.1
1,710,298	+				+0.0
1,710,298	+				-1.0
1,710,299	-				+1.6
1,710,299	-				+1.0
1,710,299	-				-1.3
1,710,299	-				+1.7
1,710,299	-				-1.8
1,710,299	-				+2.0
1,710,463	+				+0.0
1,710,464	-				+2.0
1,710,464	-				+0.0
1,710,464	-				+0.3
1,710,471	+				-0.5
1,710,471	+				-1.3
1,710,471	+				+0.6
1,710,492	-				-0.1
1,710,709	-		ABIE53_001532	0.58	-0.8
1,710,762	+		ABIE53_001532	0.75	+0.2
1,710,762	+		ABIE53_001532	0.75	+1.0
1,710,762	+		ABIE53_001532	0.75	-3.3
1,710,762	+		ABIE53_001532	0.75	-3.1
1,710,762	+		ABIE53_001532	0.75	+1.0
1,710,762	+		ABIE53_001532	0.75	-0.1
1,710,763	-		ABIE53_001532	0.75	+0.0
1,710,764	+		ABIE53_001532	0.75	+1.6
1,710,764	+		ABIE53_001532	0.75	+1.0
1,710,765	-		ABIE53_001532	0.75	-0.0
1,710,765	-		ABIE53_001532	0.75	+0.0
1,710,766	+		ABIE53_001532	0.76	+0.0
1,710,766	+		ABIE53_001532	0.76	-1.4
1,710,766	+		ABIE53_001532	0.76	+3.4
1,710,766	+		ABIE53_001532	0.76	+2.6
1,710,766	+		ABIE53_001532	0.76	+0.0
1,710,766	+		ABIE53_001532	0.76	+1.0
1,710,766	+		ABIE53_001532	0.76	+2.0
1,710,767	-		ABIE53_001532	0.76	+0.0
1,710,767	-		ABIE53_001532	0.76	-0.4
1,710,767	-		ABIE53_001532	0.76	-0.4
1,710,767	-		ABIE53_001532	0.76	-0.8
1,710,767	-		ABIE53_001532	0.76	-2.4
1,710,830	+				+1.6
1,710,830	+				+1.4
1,710,830	+				+0.0
1,710,831	-				+3.0
1,710,864	+				-1.3
1,710,875	+				+0.0
1,710,875	+				-1.5
1,710,875	+				-2.0
1,710,904	+				-2.1
1,710,904	+				-1.3
1,710,904	+				+2.0
1,710,905	-				+2.3
1,710,921	+				+0.6
1,710,921	+				-1.0
1,710,922	-				-2.5
1,710,922	-				-1.0
1,710,922	-				+1.0
1,710,922	-				+0.2
1,710,939	+				+2.6
1,710,940	-				-1.0
1,710,940	-				+0.8
1,710,940	-				-3.3
1,710,940	-				+1.0
1,710,940	-				+0.5
1,710,940	-				-0.5
1,710,940	-				-1.0
1,710,952	+				+1.0
1,710,953	-				-1.3
1,710,953	-				-1.5
1,710,978	+				-2.4
1,710,979	-				-0.5
1,711,041	+				-1.1
1,711,041	+				+0.1
1,711,042	-				-1.8
1,711,042	-				-0.5
1,711,042	-				-0.5
1,711,042	-				+0.3
1,711,107	+				+2.0
1,711,125	+				-1.5
1,711,126	-				-0.2
1,711,126	-				+1.0
1,711,126	-				+0.0
1,711,126	-				+1.0
1,711,131	+				+0.0
1,711,132	-				+3.0
1,711,217	+		ABIE53_001533	0.19	-1.5
1,711,218	-		ABIE53_001533	0.19	-1.2
1,711,435	-		ABIE53_001533	0.43	-2.4
1,711,435	-		ABIE53_001533	0.43	-0.3
1,711,545	+		ABIE53_001533	0.55	-1.4
1,711,622	+		ABIE53_001533	0.63	-1.5
1,711,622	+		ABIE53_001533	0.63	-0.5