Strain Fitness in Sinorhizobium meliloti 1021 around SMc01709

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01710 and SMc01709 overlap by 209 nucleotidesSMc01709 and SMc01708 are separated by 662 nucleotides SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478 SMc01710 SMc01709: SMc01709 - signal peptide protein, at 501,270 to 501,773 SMc01709 SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311 SMc01708 Position (kb) 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1at 500.405 kb on - strand, within SMc01710at 500.405 kb on - strand, within SMc01710at 500.470 kb on - strand, within SMc01710at 500.590 kb on + strand, within SMc01710at 500.591 kb on - strand, within SMc01710at 500.591 kb on - strand, within SMc01710at 500.632 kb on + strand, within SMc01710at 500.672 kb on - strand, within SMc01710at 500.672 kb on - strand, within SMc01710at 500.702 kb on + strand, within SMc01710at 500.702 kb on + strand, within SMc01710at 500.703 kb on - strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.751 kb on - strand, within SMc01710at 500.751 kb on - strand, within SMc01710at 500.840 kb on + strand, within SMc01710at 500.840 kb on + strand, within SMc01710at 501.112 kb on + strandat 501.113 kb on - strandat 501.285 kb on - strandat 501.285 kb on - strandat 501.536 kb on + strand, within SMc01709at 501.537 kb on - strand, within SMc01709at 501.627 kb on + strand, within SMc01709at 501.628 kb on - strand, within SMc01709at 501.743 kb on + strandat 501.743 kb on + strandat 501.771 kb on + strandat 501.772 kb on - strandat 501.838 kb on + strandat 501.838 kb on + strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.848 kb on + strandat 501.849 kb on - strandat 501.849 kb on - strandat 502.214 kb on - strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.260 kb on - strandat 502.260 kb on - strandat 502.324 kb on + strandat 502.325 kb on - strandat 502.353 kb on + strandat 502.353 kb on + strandat 502.401 kb on + strandat 502.495 kb on + strandat 502.496 kb on - strandat 502.496 kb on - strandat 502.496 kb on - strandat 502.542 kb on - strandat 502.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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500,405 - SMc01710 0.78 +1.6
500,405 - SMc01710 0.78 -2.2
500,470 - SMc01710 0.79 -1.9
500,590 + SMc01710 0.82 -2.0
500,591 - SMc01710 0.82 +0.2
500,591 - SMc01710 0.82 +0.1
500,632 + SMc01710 0.82 -1.3
500,672 - SMc01710 0.83 +0.1
500,672 - SMc01710 0.83 +1.0
500,702 + SMc01710 0.84 +0.0
500,702 + SMc01710 0.84 -2.8
500,703 - SMc01710 0.84 -0.7
500,750 + SMc01710 0.85 -0.4
500,750 + SMc01710 0.85 -0.7
500,750 + SMc01710 0.85 -0.4
500,750 + SMc01710 0.85 +0.3
500,750 + SMc01710 0.85 +1.0
500,751 - SMc01710 0.85 -0.9
500,751 - SMc01710 0.85 +1.2
500,840 + SMc01710 0.87 -0.5
500,840 + SMc01710 0.87 -1.3
501,112 + -1.1
501,113 - +0.2
501,285 - +0.3
501,285 - -0.4
501,536 + SMc01709 0.53 -0.7
501,537 - SMc01709 0.53 +0.4
501,627 + SMc01709 0.71 -2.6
501,628 - SMc01709 0.71 -0.4
501,743 + -2.7
501,743 + -0.5
501,771 + -1.8
501,772 - -1.0
501,838 + +0.5
501,838 + +0.0
501,839 - -0.7
501,839 - -1.0
501,839 - +1.0
501,848 + +0.1
501,849 - +0.6
501,849 - -0.9
502,214 - +0.4
502,259 + -0.4
502,259 + -0.4
502,259 + +1.3
502,259 + -0.9
502,259 + +0.0
502,259 + -2.4
502,260 - +0.0
502,260 - -0.1
502,324 + -0.4
502,325 - -0.3
502,353 + +0.3
502,353 + +0.1
502,401 + +0.2
502,495 + -0.5
502,496 - +0.6
502,496 - -0.6
502,496 - -0.5
502,542 - -0.4
502,658 - -0.7

Or see this region's nucleotide sequence