Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0940 and SMa0941 are separated by 120 nucleotides SMa0941 and SMa0943 are separated by 231 nucleotides SMa0943 and SMa0945 are separated by 62 nucleotides
SMa0940: SMa0940 - Response regulator, at 525,119 to 525,733
SMa0940
SMa0941: SMa0941 - hypothetical protein, at 525,854 to 526,237
SMa0941
SMa0943: SMa0943 - arylsulfatase, at 526,469 to 528,106
SMa0943
SMa0945: SMa0945 - hypothetical protein, at 528,169 to 528,744
SMa0945
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -2
-1
0
1 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.613 kb on + strand, within SMa0940 at 525.614 kb on - strand, within SMa0940 at 525.776 kb on - strand at 525.850 kb on + strand at 525.850 kb on + strand at 525.916 kb on - strand, within SMa0941 at 525.916 kb on - strand, within SMa0941 at 525.956 kb on + strand, within SMa0941 at 525.957 kb on - strand, within SMa0941 at 525.989 kb on - strand, within SMa0941 at 526.109 kb on - strand, within SMa0941 at 526.285 kb on + strand at 526.286 kb on - strand at 526.286 kb on - strand at 526.303 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.477 kb on + strand at 526.612 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.614 kb on + strand at 526.615 kb on - strand at 526.661 kb on + strand, within SMa0943 at 526.737 kb on + strand, within SMa0943 at 526.738 kb on - strand, within SMa0943 at 526.739 kb on + strand, within SMa0943 at 526.739 kb on + strand, within SMa0943 at 526.740 kb on - strand, within SMa0943 at 526.867 kb on - strand, within SMa0943 at 526.937 kb on + strand, within SMa0943 at 526.987 kb on - strand, within SMa0943 at 527.074 kb on + strand at 527.074 kb on + strand, within SMa0943 at 527.075 kb on - strand, within SMa0943 at 527.130 kb on + strand, within SMa0943 at 527.131 kb on - strand, within SMa0943 at 527.131 kb on - strand, within SMa0943 at 527.284 kb on + strand, within SMa0943 at 527.284 kb on + strand, within SMa0943 at 527.288 kb on + strand, within SMa0943 at 527.288 kb on + strand, within SMa0943 at 527.289 kb on - strand, within SMa0943 at 527.289 kb on - strand, within SMa0943 at 527.289 kb on - strand, within SMa0943 at 527.424 kb on + strand, within SMa0943 at 527.424 kb on + strand, within SMa0943 at 527.425 kb on - strand, within SMa0943 at 527.425 kb on - strand, within SMa0943 at 527.425 kb on - strand, within SMa0943 at 527.432 kb on - strand, within SMa0943 at 527.766 kb on - strand, within SMa0943 at 527.766 kb on - strand, within SMa0943 at 528.020 kb on + strand at 528.121 kb on - strand at 528.250 kb on + strand, within SMa0945 at 528.268 kb on + strand, within SMa0945 at 528.269 kb on - strand, within SMa0945 at 528.274 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.314 kb on + strand, within SMa0945 at 528.315 kb on - strand, within SMa0945 at 528.315 kb on - strand, within SMa0945 at 528.360 kb on + strand, within SMa0945 at 528.473 kb on - strand, within SMa0945 at 528.473 kb on - strand, within SMa0945 at 528.495 kb on - strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.600 kb on + strand, within SMa0945 at 528.601 kb on - strand at 528.601 kb on - strand, within SMa0945 at 528.601 kb on - strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.632 kb on + strand, within SMa0945 at 528.633 kb on - strand, within SMa0945 at 528.747 kb on + strand at 528.748 kb on - strand at 528.847 kb on + strand at 528.847 kb on + strand at 528.848 kb on - strand at 529.029 kb on + strand at 529.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 525,521 - SMa0940 0.65 -0.0 525,521 - SMa0940 0.65 -1.0 525,521 - SMa0940 0.65 +0.4 525,613 + SMa0940 0.80 -1.1 525,614 - SMa0940 0.80 -0.1 525,776 - +0.3 525,850 + +0.5 525,850 + -0.1 525,916 - SMa0941 0.16 -0.1 525,916 - SMa0941 0.16 +0.0 525,956 + SMa0941 0.27 -0.4 525,957 - SMa0941 0.27 -1.2 525,989 - SMa0941 0.35 -1.7 526,109 - SMa0941 0.66 +0.3 526,285 + +0.5 526,286 - -0.2 526,286 - -0.2 526,303 + -1.3 526,477 + -0.0 526,477 + -1.4 526,477 + +0.2 526,612 + -1.0 526,614 + +1.4 526,614 + -0.3 526,614 + -0.6 526,615 - +0.1 526,661 + SMa0943 0.12 -0.4 526,737 + SMa0943 0.16 -0.4 526,738 - SMa0943 0.16 +0.1 526,739 + SMa0943 0.16 +0.1 526,739 + SMa0943 0.16 -0.3 526,740 - SMa0943 0.17 -1.9 526,867 - SMa0943 0.24 -0.5 526,937 + SMa0943 0.29 -0.4 526,987 - SMa0943 0.32 -0.7 527,074 + -0.6 527,074 + SMa0943 0.37 +0.4 527,075 - SMa0943 0.37 -0.2 527,130 + SMa0943 0.40 -0.2 527,131 - SMa0943 0.40 +0.4 527,131 - SMa0943 0.40 -0.5 527,284 + SMa0943 0.50 +0.1 527,284 + SMa0943 0.50 -0.9 527,288 + SMa0943 0.50 -0.6 527,288 + SMa0943 0.50 -0.2 527,289 - SMa0943 0.50 +0.8 527,289 - SMa0943 0.50 -0.3 527,289 - SMa0943 0.50 +0.3 527,424 + SMa0943 0.58 -0.9 527,424 + SMa0943 0.58 -0.5 527,425 - SMa0943 0.58 +0.1 527,425 - SMa0943 0.58 -0.1 527,425 - SMa0943 0.58 -0.3 527,432 - SMa0943 0.59 +0.4 527,766 - SMa0943 0.79 -0.5 527,766 - SMa0943 0.79 -1.0 528,020 + +0.2 528,121 - +0.7 528,250 + SMa0945 0.14 -0.2 528,268 + SMa0945 0.17 -0.3 528,269 - SMa0945 0.17 +0.4 528,274 + SMa0945 0.18 +1.4 528,314 + SMa0945 0.25 -0.3 528,314 + SMa0945 0.25 +0.8 528,314 + SMa0945 0.25 -0.1 528,314 + SMa0945 0.25 +1.4 528,315 - SMa0945 0.25 -0.3 528,315 - SMa0945 0.25 +0.3 528,360 + SMa0945 0.33 -0.5 528,473 - SMa0945 0.53 -0.4 528,473 - SMa0945 0.53 -0.7 528,495 - SMa0945 0.57 -1.0 528,600 + SMa0945 0.75 +0.8 528,600 + SMa0945 0.75 -0.4 528,600 + SMa0945 0.75 +0.1 528,600 + SMa0945 0.75 -0.1 528,600 + SMa0945 0.75 -0.3 528,601 - -0.6 528,601 - SMa0945 0.75 -0.1 528,601 - SMa0945 0.75 -0.5 528,632 + SMa0945 0.80 +0.7 528,632 + SMa0945 0.80 -0.9 528,632 + SMa0945 0.80 -0.3 528,633 - SMa0945 0.81 -0.5 528,747 + -0.3 528,748 - -0.0 528,847 + -0.7 528,847 + -0.0 528,848 - -1.0 529,029 + -0.2 529,101 + -0.3
Or see this region's nucleotide sequence