Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21185

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21184 and SM_b21185 are separated by 36 nucleotidesSM_b21185 and SM_b21186 are separated by 115 nucleotides SM_b21184: SM_b21184 - acetate kinase, at 932,547 to 933,725 _b21184 SM_b21185: SM_b21185 - succinate-semialdehyde dehydrogenase (NAD(P)+) protein, at 933,762 to 935,237 _b21185 SM_b21186: SM_b21186 - 4-aminobutyrate aminotransferase, at 935,353 to 936,621 _b21186 Position (kb) 933 934 935 936Strain fitness (log2 ratio) -2 -1 0 1at 932.842 kb on - strand, within SM_b21184at 933.030 kb on + strand, within SM_b21184at 933.031 kb on - strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.051 kb on + strand, within SM_b21184at 933.052 kb on - strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.099 kb on + strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.100 kb on - strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.101 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.314 kb on + strand, within SM_b21184at 933.524 kb on + strand, within SM_b21184at 933.699 kb on - strandat 933.741 kb on + strandat 933.741 kb on + strandat 933.741 kb on + strandat 933.784 kb on + strandat 933.785 kb on - strandat 933.799 kb on + strandat 933.799 kb on + strandat 933.800 kb on - strandat 933.800 kb on - strandat 933.891 kb on - strandat 933.979 kb on + strand, within SM_b21185at 933.979 kb on + strand, within SM_b21185at 933.979 kb on + strand, within SM_b21185at 933.980 kb on - strand, within SM_b21185at 933.980 kb on - strand, within SM_b21185at 933.987 kb on - strand, within SM_b21185at 934.095 kb on - strand, within SM_b21185at 934.170 kb on + strand, within SM_b21185at 934.327 kb on + strand, within SM_b21185at 934.327 kb on + strand, within SM_b21185at 934.328 kb on - strand, within SM_b21185at 934.588 kb on + strand, within SM_b21185at 934.589 kb on - strand, within SM_b21185at 934.770 kb on + strand, within SM_b21185at 934.800 kb on - strand, within SM_b21185at 934.800 kb on - strand, within SM_b21185at 934.873 kb on + strand, within SM_b21185at 934.873 kb on + strand, within SM_b21185at 934.874 kb on - strand, within SM_b21185at 934.874 kb on - strand, within SM_b21185at 935.103 kb on + strandat 935.104 kb on - strandat 935.283 kb on + strandat 935.283 kb on + strandat 935.284 kb on - strandat 935.284 kb on - strandat 935.385 kb on + strandat 935.739 kb on - strand, within SM_b21186at 935.739 kb on - strand, within SM_b21186at 935.739 kb on - strand, within SM_b21186at 935.987 kb on + strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186at 936.168 kb on - strand, within SM_b21186

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
932,842 - SM_b21184 0.25 +0.0
933,030 + SM_b21184 0.41 +0.2
933,031 - SM_b21184 0.41 -0.2
933,051 + SM_b21184 0.43 -0.4
933,051 + SM_b21184 0.43 +0.4
933,051 + SM_b21184 0.43 +0.4
933,052 - SM_b21184 0.43 +1.3
933,099 + SM_b21184 0.47 -0.5
933,099 + SM_b21184 0.47 -0.4
933,099 + SM_b21184 0.47 -0.7
933,100 - SM_b21184 0.47 -0.0
933,100 - SM_b21184 0.47 +0.9
933,100 - SM_b21184 0.47 -0.3
933,100 - SM_b21184 0.47 -0.7
933,101 + SM_b21184 0.47 -0.5
933,101 + SM_b21184 0.47 +1.0
933,314 + SM_b21184 0.65 +0.5
933,314 + SM_b21184 0.65 +0.9
933,314 + SM_b21184 0.65 +0.7
933,524 + SM_b21184 0.83 +0.2
933,699 - +1.6
933,741 + -0.2
933,741 + -0.2
933,741 + +0.3
933,784 + -2.5
933,785 - -0.9
933,799 + -0.3
933,799 + -1.5
933,800 - -0.2
933,800 - -0.5
933,891 - -0.4
933,979 + SM_b21185 0.15 +1.5
933,979 + SM_b21185 0.15 -0.3
933,979 + SM_b21185 0.15 -0.1
933,980 - SM_b21185 0.15 +0.4
933,980 - SM_b21185 0.15 +1.7
933,987 - SM_b21185 0.15 -0.4
934,095 - SM_b21185 0.23 +0.6
934,170 + SM_b21185 0.28 +1.3
934,327 + SM_b21185 0.38 -0.6
934,327 + SM_b21185 0.38 +1.7
934,328 - SM_b21185 0.38 +0.2
934,588 + SM_b21185 0.56 +0.6
934,589 - SM_b21185 0.56 -0.6
934,770 + SM_b21185 0.68 +0.8
934,800 - SM_b21185 0.70 -0.3
934,800 - SM_b21185 0.70 +0.3
934,873 + SM_b21185 0.75 +0.0
934,873 + SM_b21185 0.75 +0.6
934,874 - SM_b21185 0.75 -0.0
934,874 - SM_b21185 0.75 -0.2
935,103 + +0.1
935,104 - -0.4
935,283 + -0.5
935,283 + +0.4
935,284 - +1.4
935,284 - +0.1
935,385 + +0.6
935,739 - SM_b21186 0.30 -0.3
935,739 - SM_b21186 0.30 +1.3
935,739 - SM_b21186 0.30 -0.7
935,987 + SM_b21186 0.50 -0.3
936,168 - SM_b21186 0.64 -0.2
936,168 - SM_b21186 0.64 -0.2
936,168 - SM_b21186 0.64 -1.1

Or see this region's nucleotide sequence