Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14005 and BBR_RS14010 are separated by 155 nucleotides BBR_RS14010 and BBR_RS14015 overlap by 19 nucleotides BBR_RS14015 and BBR_RS14020 are separated by 105 nucleotides BBR_RS14020 and BBR_RS20815 are separated by 67 nucleotides
BBR_RS14005: BBR_RS14005 - haloacid dehalogenase, at 919,178 to 920,224
_RS14005
BBR_RS14010: BBR_RS14010 - TlyA family rRNA (cytidine-2'-O)-methyltransferase, at 920,380 to 921,153
_RS14010
BBR_RS14015: BBR_RS14015 - hypothetical protein, at 921,135 to 921,809
_RS14015
BBR_RS14020: BBR_RS14020 - TrkA family potassium uptake protein, at 921,915 to 922,337
_RS14020
BBR_RS20815: BBR_RS20815 - potassium transporter Trk, at 922,405 to 922,824
_RS20815
Position (kb) 921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 920.137 kb on + strand at 920.188 kb on - strand at 920.188 kb on - strand at 920.192 kb on + strand at 920.200 kb on - strand at 920.240 kb on - strand at 920.246 kb on + strand at 920.332 kb on + strand at 920.332 kb on + strand at 920.340 kb on - strand at 920.410 kb on - strand at 920.465 kb on - strand, within BBR_RS14010 at 920.471 kb on - strand, within BBR_RS14010 at 920.512 kb on - strand, within BBR_RS14010 at 920.551 kb on - strand, within BBR_RS14010 at 920.560 kb on - strand, within BBR_RS14010 at 920.619 kb on + strand, within BBR_RS14010 at 920.753 kb on + strand, within BBR_RS14010 at 920.777 kb on + strand, within BBR_RS14010 at 920.787 kb on - strand, within BBR_RS14010 at 920.812 kb on + strand, within BBR_RS14010 at 920.897 kb on + strand, within BBR_RS14010 at 920.952 kb on + strand, within BBR_RS14010 at 921.051 kb on - strand, within BBR_RS14010 at 921.051 kb on - strand, within BBR_RS14010 at 921.053 kb on - strand, within BBR_RS14010 at 921.068 kb on + strand, within BBR_RS14010 at 921.070 kb on - strand, within BBR_RS14010 at 921.075 kb on - strand, within BBR_RS14010 at 921.076 kb on - strand at 921.198 kb on + strand at 921.235 kb on + strand, within BBR_RS14015 at 921.283 kb on + strand, within BBR_RS14015 at 921.364 kb on - strand, within BBR_RS14015 at 921.366 kb on + strand, within BBR_RS14015 at 921.389 kb on - strand, within BBR_RS14015 at 921.430 kb on + strand, within BBR_RS14015 at 921.430 kb on + strand, within BBR_RS14015 at 921.436 kb on + strand, within BBR_RS14015 at 921.528 kb on + strand, within BBR_RS14015 at 921.637 kb on + strand, within BBR_RS14015 at 921.759 kb on - strand at 921.777 kb on + strand at 921.869 kb on - strand at 921.918 kb on + strand at 921.992 kb on + strand, within BBR_RS14020 at 921.992 kb on + strand, within BBR_RS14020 at 922.049 kb on - strand, within BBR_RS14020 at 922.073 kb on + strand, within BBR_RS14020 at 922.121 kb on + strand, within BBR_RS14020 at 922.204 kb on + strand, within BBR_RS14020 at 922.217 kb on - strand, within BBR_RS14020 at 922.225 kb on + strand, within BBR_RS14020 at 922.238 kb on + strand, within BBR_RS14020 at 922.277 kb on + strand, within BBR_RS14020 at 922.384 kb on + strand at 922.429 kb on + strand at 922.437 kb on + strand at 922.503 kb on - strand, within BBR_RS20815 at 922.528 kb on + strand, within BBR_RS20815 at 922.581 kb on - strand, within BBR_RS20815 at 922.624 kb on - strand, within BBR_RS20815 at 922.648 kb on + strand, within BBR_RS20815 at 922.665 kb on - strand, within BBR_RS20815 at 922.738 kb on - strand, within BBR_RS20815 at 922.742 kb on - strand, within BBR_RS20815 at 922.754 kb on + strand, within BBR_RS20815
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse17; day3 remove 920,137 + +0.4 920,188 - -0.4 920,188 - +2.6 920,192 + +0.5 920,200 - +0.1 920,240 - +1.3 920,246 + +1.3 920,332 + +1.5 920,332 + -2.9 920,340 - -0.6 920,410 - +2.7 920,465 - BBR_RS14010 0.11 +0.8 920,471 - BBR_RS14010 0.12 +0.3 920,512 - BBR_RS14010 0.17 -2.0 920,551 - BBR_RS14010 0.22 -0.6 920,560 - BBR_RS14010 0.23 +0.7 920,619 + BBR_RS14010 0.31 -0.2 920,753 + BBR_RS14010 0.48 +3.3 920,777 + BBR_RS14010 0.51 +0.2 920,787 - BBR_RS14010 0.53 -1.1 920,812 + BBR_RS14010 0.56 +3.0 920,897 + BBR_RS14010 0.67 +0.5 920,952 + BBR_RS14010 0.74 +1.6 921,051 - BBR_RS14010 0.87 -0.2 921,051 - BBR_RS14010 0.87 -2.0 921,053 - BBR_RS14010 0.87 +0.3 921,068 + BBR_RS14010 0.89 -1.1 921,070 - BBR_RS14010 0.89 +2.2 921,075 - BBR_RS14010 0.90 +1.8 921,076 - +0.5 921,198 + -0.5 921,235 + BBR_RS14015 0.15 -0.9 921,283 + BBR_RS14015 0.22 +1.6 921,364 - BBR_RS14015 0.34 -0.6 921,366 + BBR_RS14015 0.34 -1.3 921,389 - BBR_RS14015 0.38 -0.7 921,430 + BBR_RS14015 0.44 -2.0 921,430 + BBR_RS14015 0.44 +0.7 921,436 + BBR_RS14015 0.45 -0.9 921,528 + BBR_RS14015 0.58 -1.0 921,637 + BBR_RS14015 0.74 -0.8 921,759 - -0.4 921,777 + +2.1 921,869 - +0.3 921,918 + +1.8 921,992 + BBR_RS14020 0.18 -0.7 921,992 + BBR_RS14020 0.18 +0.8 922,049 - BBR_RS14020 0.32 +0.1 922,073 + BBR_RS14020 0.37 +0.3 922,121 + BBR_RS14020 0.49 +2.0 922,204 + BBR_RS14020 0.68 +0.9 922,217 - BBR_RS14020 0.71 -1.9 922,225 + BBR_RS14020 0.73 -1.0 922,238 + BBR_RS14020 0.76 +0.3 922,277 + BBR_RS14020 0.86 -0.4 922,384 + +0.6 922,429 + +0.7 922,437 + +0.1 922,503 - BBR_RS20815 0.23 -0.4 922,528 + BBR_RS20815 0.29 -0.5 922,581 - BBR_RS20815 0.42 -0.3 922,624 - BBR_RS20815 0.52 +0.2 922,648 + BBR_RS20815 0.58 -0.1 922,665 - BBR_RS20815 0.62 -0.4 922,738 - BBR_RS20815 0.79 -2.2 922,742 - BBR_RS20815 0.80 +1.5 922,754 + BBR_RS20815 0.83 -1.6
Or see this region's nucleotide sequence