Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13680

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13675 and BBR_RS20795 are separated by 666 nucleotidesBBR_RS20795 and BBR_RS20800 are separated by 4 nucleotidesBBR_RS20800 and BBR_RS13680 overlap by 28 nucleotidesBBR_RS13680 and BBR_RS13685 are separated by 357 nucleotidesBBR_RS13685 and BBR_RS13690 are separated by 61 nucleotides BBR_RS13675: BBR_RS13675 - glutaredoxin-like protein, at 842,201 to 842,452 _RS13675 BBR_RS20795: BBR_RS20795 - cystathionine gamma-lyase, at 843,119 to 843,286 _RS20795 BBR_RS20800: BBR_RS20800 - hypothetical protein, at 843,291 to 843,473 _RS20800 BBR_RS13680: BBR_RS13680 - SPFH domain-containing protein, at 843,446 to 844,357 _RS13680 BBR_RS13685: BBR_RS13685 - DUF4143 domain-containing protein, at 844,715 to 845,152 _RS13685 BBR_RS13690: BBR_RS13690 - patatin family protein, at 845,214 to 846,059 _RS13690 Position (kb) 843 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 842.510 kb on + strandat 842.518 kb on - strandat 842.518 kb on - strandat 842.552 kb on + strandat 842.562 kb on + strandat 842.628 kb on + strandat 842.628 kb on + strandat 842.695 kb on + strandat 842.695 kb on + strandat 842.700 kb on + strandat 842.708 kb on - strandat 842.717 kb on + strandat 842.767 kb on - strandat 842.785 kb on + strandat 842.937 kb on + strandat 842.943 kb on - strandat 843.008 kb on + strandat 843.064 kb on + strandat 843.072 kb on - strandat 843.072 kb on - strandat 843.111 kb on - strandat 843.233 kb on - strand, within BBR_RS20795at 843.244 kb on + strand, within BBR_RS20795at 843.275 kb on + strandat 843.285 kb on + strandat 843.323 kb on + strand, within BBR_RS20800at 843.450 kb on - strandat 843.476 kb on + strandat 843.484 kb on - strandat 843.502 kb on + strandat 843.502 kb on + strandat 843.506 kb on + strandat 843.514 kb on - strandat 843.555 kb on - strand, within BBR_RS13680at 843.599 kb on + strand, within BBR_RS13680at 843.605 kb on - strand, within BBR_RS13680at 843.705 kb on + strand, within BBR_RS13680at 843.722 kb on + strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.762 kb on + strand, within BBR_RS13680at 843.770 kb on - strand, within BBR_RS13680at 843.779 kb on - strand, within BBR_RS13680at 843.796 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.847 kb on - strand, within BBR_RS13680at 843.851 kb on + strand, within BBR_RS13680at 843.884 kb on + strand, within BBR_RS13680at 843.892 kb on - strand, within BBR_RS13680at 843.894 kb on - strand, within BBR_RS13680at 843.929 kb on + strand, within BBR_RS13680at 843.931 kb on + strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.970 kb on + strand, within BBR_RS13680at 844.101 kb on + strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.146 kb on - strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.156 kb on - strand, within BBR_RS13680at 844.161 kb on - strand, within BBR_RS13680at 844.168 kb on + strand, within BBR_RS13680at 844.183 kb on + strand, within BBR_RS13680at 844.191 kb on - strand, within BBR_RS13680at 844.205 kb on + strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.216 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.289 kb on - strandat 844.328 kb on + strandat 844.387 kb on + strandat 844.527 kb on + strandat 844.535 kb on - strandat 844.624 kb on + strandat 844.624 kb on + strandat 844.709 kb on + strandat 844.719 kb on - strandat 844.789 kb on + strand, within BBR_RS13685at 844.803 kb on + strand, within BBR_RS13685at 844.808 kb on + strand, within BBR_RS13685at 844.817 kb on + strand, within BBR_RS13685at 844.853 kb on + strand, within BBR_RS13685at 844.861 kb on - strand, within BBR_RS13685at 844.904 kb on + strand, within BBR_RS13685at 844.910 kb on - strand, within BBR_RS13685at 844.912 kb on - strand, within BBR_RS13685at 844.914 kb on - strand, within BBR_RS13685at 844.994 kb on + strand, within BBR_RS13685at 844.994 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.018 kb on + strand, within BBR_RS13685at 845.020 kb on - strand, within BBR_RS13685at 845.026 kb on - strand, within BBR_RS13685at 845.026 kb on - strand, within BBR_RS13685at 845.069 kb on - strand, within BBR_RS13685at 845.185 kb on + strandat 845.195 kb on + strandat 845.201 kb on - strandat 845.250 kb on + strandat 845.256 kb on + strandat 845.257 kb on - strandat 845.265 kb on - strandat 845.304 kb on + strand, within BBR_RS13690at 845.311 kb on + strand, within BBR_RS13690at 845.311 kb on + strand, within BBR_RS13690at 845.319 kb on - strand, within BBR_RS13690

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse17; day3
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842,510 + +0.3
842,518 - +0.6
842,518 - +0.3
842,552 + -0.0
842,562 + +0.9
842,628 + +1.0
842,628 + +0.8
842,695 + -0.8
842,695 + -0.9
842,700 + +0.8
842,708 - +2.0
842,717 + -1.8
842,767 - +0.7
842,785 + +1.6
842,937 + -1.8
842,943 - -0.4
843,008 + -0.7
843,064 + -0.1
843,072 - +2.1
843,072 - -0.2
843,111 - +0.6
843,233 - BBR_RS20795 0.68 -0.2
843,244 + BBR_RS20795 0.74 +0.2
843,275 + +0.1
843,285 + +0.3
843,323 + BBR_RS20800 0.17 -0.4
843,450 - +0.3
843,476 + +0.2
843,484 - -1.0
843,502 + -1.3
843,502 + -0.1
843,506 + +0.7
843,514 - -2.0
843,555 - BBR_RS13680 0.12 -1.1
843,599 + BBR_RS13680 0.17 +0.0
843,605 - BBR_RS13680 0.17 -1.6
843,705 + BBR_RS13680 0.28 -1.7
843,722 + BBR_RS13680 0.30 -1.6
843,728 - BBR_RS13680 0.31 -1.5
843,728 - BBR_RS13680 0.31 -0.7
843,762 + BBR_RS13680 0.35 +0.7
843,770 - BBR_RS13680 0.36 +0.6
843,779 - BBR_RS13680 0.37 -1.5
843,796 + BBR_RS13680 0.38 -2.8
843,838 + BBR_RS13680 0.43 +0.2
843,838 + BBR_RS13680 0.43 -2.2
843,838 + BBR_RS13680 0.43 +1.0
843,847 - BBR_RS13680 0.44 +0.5
843,851 + BBR_RS13680 0.44 +0.5
843,884 + BBR_RS13680 0.48 -1.0
843,892 - BBR_RS13680 0.49 -0.7
843,894 - BBR_RS13680 0.49 -1.6
843,929 + BBR_RS13680 0.53 +1.7
843,931 + BBR_RS13680 0.53 -2.9
843,939 - BBR_RS13680 0.54 +0.8
843,939 - BBR_RS13680 0.54 -1.4
843,970 + BBR_RS13680 0.57 +0.9
844,101 + BBR_RS13680 0.72 -0.5
844,107 - BBR_RS13680 0.72 -2.4
844,107 - BBR_RS13680 0.72 +0.3
844,146 - BBR_RS13680 0.77 +1.7
844,153 + BBR_RS13680 0.78 +0.2
844,153 + BBR_RS13680 0.78 -0.4
844,153 + BBR_RS13680 0.78 -2.0
844,153 + BBR_RS13680 0.78 -2.6
844,153 + BBR_RS13680 0.78 -1.1
844,156 - BBR_RS13680 0.78 -0.3
844,161 - BBR_RS13680 0.78 -2.9
844,168 + BBR_RS13680 0.79 -1.1
844,183 + BBR_RS13680 0.81 +0.9
844,191 - BBR_RS13680 0.82 -2.6
844,205 + BBR_RS13680 0.83 -0.2
844,208 - BBR_RS13680 0.84 +1.2
844,208 - BBR_RS13680 0.84 +0.1
844,216 + BBR_RS13680 0.84 +0.0
844,258 + BBR_RS13680 0.89 -0.1
844,258 + BBR_RS13680 0.89 +0.6
844,258 + BBR_RS13680 0.89 +0.7
844,289 - +1.1
844,328 + +0.4
844,387 + -0.8
844,527 + +0.7
844,535 - +0.3
844,624 + -0.1
844,624 + -0.0
844,709 + -0.8
844,719 - +0.8
844,789 + BBR_RS13685 0.17 +0.7
844,803 + BBR_RS13685 0.20 -0.4
844,808 + BBR_RS13685 0.21 +0.6
844,817 + BBR_RS13685 0.23 +1.5
844,853 + BBR_RS13685 0.32 +2.3
844,861 - BBR_RS13685 0.33 +0.0
844,904 + BBR_RS13685 0.43 +0.7
844,910 - BBR_RS13685 0.45 +1.5
844,912 - BBR_RS13685 0.45 -0.3
844,914 - BBR_RS13685 0.45 -0.1
844,994 + BBR_RS13685 0.64 -1.2
844,994 + BBR_RS13685 0.64 -0.1
845,018 + BBR_RS13685 0.69 +1.8
845,018 + BBR_RS13685 0.69 -2.3
845,018 + BBR_RS13685 0.69 +1.3
845,018 + BBR_RS13685 0.69 -0.8
845,018 + BBR_RS13685 0.69 -0.1
845,018 + BBR_RS13685 0.69 -2.0
845,018 + BBR_RS13685 0.69 -2.3
845,020 - BBR_RS13685 0.70 -0.3
845,026 - BBR_RS13685 0.71 -2.6
845,026 - BBR_RS13685 0.71 +1.0
845,069 - BBR_RS13685 0.81 -2.0
845,185 + +0.8
845,195 + -1.8
845,201 - +2.8
845,250 + -2.0
845,256 + +0.5
845,257 - +0.3
845,265 - +1.0
845,304 + BBR_RS13690 0.11 +0.8
845,311 + BBR_RS13690 0.11 -0.5
845,311 + BBR_RS13690 0.11 -0.9
845,319 - BBR_RS13690 0.12 +2.5

Or see this region's nucleotide sequence