Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13210

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13205 and BBR_RS13210 are separated by 80 nucleotidesBBR_RS13210 and BBR_RS13215 are separated by 3 nucleotidesBBR_RS13215 and BBR_RS13220 are separated by 292 nucleotides BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783 _RS13205 BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042 _RS13210 BBR_RS13215: BBR_RS13215 - hypothetical protein, at 741,046 to 741,267 _RS13215 BBR_RS13220: BBR_RS13220 - hypothetical protein, at 741,560 to 742,018 _RS13220 Position (kb) 739 740 741 742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 738.879 kb on - strand, within BBR_RS13205at 738.879 kb on - strand, within BBR_RS13205at 738.937 kb on - strand, within BBR_RS13205at 739.024 kb on - strand, within BBR_RS13205at 739.075 kb on + strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.083 kb on - strand, within BBR_RS13205at 739.085 kb on + strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.093 kb on - strand, within BBR_RS13205at 739.176 kb on - strand, within BBR_RS13205at 739.212 kb on - strand, within BBR_RS13205at 739.229 kb on - strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.236 kb on + strand, within BBR_RS13205at 739.253 kb on + strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.254 kb on - strand, within BBR_RS13205at 739.302 kb on + strand, within BBR_RS13205at 739.302 kb on - strand, within BBR_RS13205at 739.308 kb on + strand, within BBR_RS13205at 739.315 kb on + strand, within BBR_RS13205at 739.316 kb on - strand, within BBR_RS13205at 739.321 kb on - strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.325 kb on + strand, within BBR_RS13205at 739.330 kb on + strand, within BBR_RS13205at 739.331 kb on + strand, within BBR_RS13205at 739.334 kb on - strand, within BBR_RS13205at 739.375 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.398 kb on - strand, within BBR_RS13205at 739.401 kb on + strand, within BBR_RS13205at 739.419 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.429 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.433 kb on + strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.437 kb on - strand, within BBR_RS13205at 739.500 kb on - strand, within BBR_RS13205at 739.523 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.537 kb on + strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.545 kb on - strand, within BBR_RS13205at 739.547 kb on + strand, within BBR_RS13205at 739.555 kb on - strand, within BBR_RS13205at 739.567 kb on - strand, within BBR_RS13205at 739.578 kb on + strand, within BBR_RS13205at 739.582 kb on + strand, within BBR_RS13205at 739.586 kb on - strand, within BBR_RS13205at 739.607 kb on - strand, within BBR_RS13205at 739.665 kb on - strandat 739.690 kb on - strandat 739.754 kb on + strandat 739.754 kb on + strandat 739.762 kb on - strandat 739.762 kb on - strandat 739.769 kb on + strandat 739.932 kb on + strandat 739.969 kb on + strandat 739.972 kb on + strandat 739.978 kb on + strandat 739.978 kb on + strandat 740.032 kb on + strand, within BBR_RS13210at 740.102 kb on - strand, within BBR_RS13210at 740.104 kb on + strand, within BBR_RS13210at 740.140 kb on + strand, within BBR_RS13210at 740.143 kb on - strand, within BBR_RS13210at 740.194 kb on - strand, within BBR_RS13210at 740.218 kb on + strand, within BBR_RS13210at 740.225 kb on - strand, within BBR_RS13210at 740.244 kb on + strand, within BBR_RS13210at 740.260 kb on + strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.268 kb on - strand, within BBR_RS13210at 740.479 kb on + strand, within BBR_RS13210at 740.549 kb on - strand, within BBR_RS13210at 740.595 kb on + strand, within BBR_RS13210at 740.659 kb on + strand, within BBR_RS13210at 740.672 kb on - strand, within BBR_RS13210at 740.677 kb on + strand, within BBR_RS13210at 740.753 kb on - strand, within BBR_RS13210at 740.770 kb on - strand, within BBR_RS13210at 740.815 kb on - strand, within BBR_RS13210at 740.878 kb on - strand, within BBR_RS13210at 741.000 kb on + strandat 741.072 kb on - strand, within BBR_RS13215at 741.111 kb on - strand, within BBR_RS13215at 741.226 kb on + strand, within BBR_RS13215at 741.276 kb on + strandat 741.278 kb on + strandat 741.278 kb on + strandat 741.284 kb on - strandat 741.286 kb on - strandat 741.478 kb on + strandat 741.478 kb on + strandat 741.486 kb on - strandat 741.486 kb on - strandat 741.493 kb on - strandat 741.500 kb on + strandat 741.500 kb on + strandat 741.618 kb on + strand, within BBR_RS13220at 741.742 kb on + strand, within BBR_RS13220at 741.750 kb on - strand, within BBR_RS13220at 741.751 kb on - strand, within BBR_RS13220at 741.823 kb on + strand, within BBR_RS13220at 741.848 kb on - strand, within BBR_RS13220at 741.850 kb on - strand, within BBR_RS13220at 741.956 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.963 kb on + strand, within BBR_RS13220at 741.965 kb on + strand, within BBR_RS13220at 741.988 kb on - strandat 741.990 kb on - strandat 741.990 kb on - strandat 742.006 kb on - strandat 742.023 kb on - strandat 742.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse17; day3
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738,879 - BBR_RS13205 0.41 +0.5
738,879 - BBR_RS13205 0.41 -1.8
738,937 - BBR_RS13205 0.44 -0.9
739,024 - BBR_RS13205 0.50 -1.1
739,075 + BBR_RS13205 0.53 -1.0
739,083 - BBR_RS13205 0.54 +1.6
739,083 - BBR_RS13205 0.54 +1.2
739,085 + BBR_RS13205 0.54 +1.4
739,093 - BBR_RS13205 0.55 -0.9
739,093 - BBR_RS13205 0.55 +0.3
739,176 - BBR_RS13205 0.60 +0.2
739,212 - BBR_RS13205 0.62 +0.8
739,229 - BBR_RS13205 0.64 -0.2
739,236 + BBR_RS13205 0.64 +0.6
739,236 + BBR_RS13205 0.64 +0.1
739,236 + BBR_RS13205 0.64 +0.6
739,253 + BBR_RS13205 0.65 +0.4
739,254 - BBR_RS13205 0.65 +1.7
739,254 - BBR_RS13205 0.65 -3.5
739,254 - BBR_RS13205 0.65 -3.2
739,302 + BBR_RS13205 0.68 -1.0
739,302 - BBR_RS13205 0.68 -0.6
739,308 + BBR_RS13205 0.69 -0.8
739,315 + BBR_RS13205 0.69 -0.1
739,316 - BBR_RS13205 0.69 +2.2
739,321 - BBR_RS13205 0.70 -0.1
739,325 + BBR_RS13205 0.70 +1.8
739,325 + BBR_RS13205 0.70 -1.7
739,325 + BBR_RS13205 0.70 +0.9
739,330 + BBR_RS13205 0.70 +0.9
739,331 + BBR_RS13205 0.70 +0.5
739,334 - BBR_RS13205 0.70 +0.8
739,375 - BBR_RS13205 0.73 +0.8
739,398 - BBR_RS13205 0.75 -0.1
739,398 - BBR_RS13205 0.75 +0.6
739,401 + BBR_RS13205 0.75 +0.5
739,419 + BBR_RS13205 0.76 -0.7
739,429 + BBR_RS13205 0.77 -1.1
739,429 + BBR_RS13205 0.77 -2.0
739,429 + BBR_RS13205 0.77 -0.5
739,429 + BBR_RS13205 0.77 +0.5
739,433 + BBR_RS13205 0.77 -1.4
739,433 + BBR_RS13205 0.77 +0.7
739,437 - BBR_RS13205 0.77 +0.5
739,437 - BBR_RS13205 0.77 -1.2
739,437 - BBR_RS13205 0.77 -2.2
739,500 - BBR_RS13205 0.81 +0.3
739,523 + BBR_RS13205 0.83 +1.2
739,537 + BBR_RS13205 0.84 -1.5
739,537 + BBR_RS13205 0.84 -1.4
739,545 - BBR_RS13205 0.84 -0.3
739,545 - BBR_RS13205 0.84 +0.5
739,545 - BBR_RS13205 0.84 +0.2
739,545 - BBR_RS13205 0.84 -0.4
739,547 + BBR_RS13205 0.84 +2.4
739,555 - BBR_RS13205 0.85 -2.6
739,567 - BBR_RS13205 0.86 -0.4
739,578 + BBR_RS13205 0.86 +0.6
739,582 + BBR_RS13205 0.87 +0.3
739,586 - BBR_RS13205 0.87 -1.9
739,607 - BBR_RS13205 0.88 -2.8
739,665 - -1.4
739,690 - -0.6
739,754 + -1.1
739,754 + +1.3
739,762 - +0.2
739,762 - -1.6
739,769 + -0.7
739,932 + -1.4
739,969 + -3.4
739,972 + -2.6
739,978 + -1.1
739,978 + -3.2
740,032 + BBR_RS13210 0.14 -0.9
740,102 - BBR_RS13210 0.20 -0.9
740,104 + BBR_RS13210 0.20 -1.4
740,140 + BBR_RS13210 0.23 -1.5
740,143 - BBR_RS13210 0.24 -1.8
740,194 - BBR_RS13210 0.28 -1.9
740,218 + BBR_RS13210 0.30 -0.9
740,225 - BBR_RS13210 0.31 -1.0
740,244 + BBR_RS13210 0.32 -2.1
740,260 + BBR_RS13210 0.34 -2.9
740,268 - BBR_RS13210 0.34 -1.6
740,268 - BBR_RS13210 0.34 -2.4
740,479 + BBR_RS13210 0.52 -2.5
740,549 - BBR_RS13210 0.58 -2.9
740,595 + BBR_RS13210 0.62 -1.8
740,659 + BBR_RS13210 0.67 -0.9
740,672 - BBR_RS13210 0.69 +0.4
740,677 + BBR_RS13210 0.69 -3.1
740,753 - BBR_RS13210 0.75 -1.6
740,770 - BBR_RS13210 0.77 -1.4
740,815 - BBR_RS13210 0.81 -2.2
740,878 - BBR_RS13210 0.86 -2.3
741,000 + -2.6
741,072 - BBR_RS13215 0.12 -0.2
741,111 - BBR_RS13215 0.29 +0.0
741,226 + BBR_RS13215 0.81 +0.1
741,276 + -0.6
741,278 + +1.6
741,278 + +0.7
741,284 - +1.4
741,286 - +1.1
741,478 + +1.0
741,478 + -0.1
741,486 - +0.2
741,486 - +2.3
741,493 - -0.2
741,500 + +1.6
741,500 + +0.4
741,618 + BBR_RS13220 0.13 -0.8
741,742 + BBR_RS13220 0.40 +1.1
741,750 - BBR_RS13220 0.41 +0.1
741,751 - BBR_RS13220 0.42 +1.1
741,823 + BBR_RS13220 0.57 +1.2
741,848 - BBR_RS13220 0.63 -0.4
741,850 - BBR_RS13220 0.63 +0.2
741,956 + BBR_RS13220 0.86 +0.3
741,963 + BBR_RS13220 0.88 +1.1
741,963 + BBR_RS13220 0.88 -0.4
741,963 + BBR_RS13220 0.88 -1.6
741,965 + BBR_RS13220 0.88 +1.2
741,988 - -2.3
741,990 - -1.1
741,990 - -0.7
742,006 - -1.6
742,023 - +2.4
742,041 - -0.7

Or see this region's nucleotide sequence