Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006339

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,703,707	+		ABIE53_006338	0.10	-0.3
2,703,707	+		ABIE53_006338	0.10	+0.3
2,703,707	+		ABIE53_006338	0.10	-2.8
2,703,708	-		ABIE53_006338	0.11	-2.8
2,703,708	-		ABIE53_006338	0.11	-2.0
2,703,708	-		ABIE53_006338	0.11	+2.3
2,703,750	+		ABIE53_006338	0.16	-1.8
2,703,751	-		ABIE53_006338	0.16	-3.5
2,703,863	+		ABIE53_006338	0.29	-0.6
2,703,864	-		ABIE53_006338	0.29	+1.0
2,703,915	+		ABIE53_006338	0.35	-0.9
2,703,956	+		ABIE53_006338	0.40	+1.0
2,704,425	-				-0.8
2,704,718	-				-0.0
2,705,065	+		ABIE53_006339	0.25	-0.6
2,705,066	-		ABIE53_006339	0.25	+1.0
2,705,066	-		ABIE53_006339	0.25	+2.7
2,705,066	-		ABIE53_006339	0.25	+0.2
2,705,607	+		ABIE53_006339	0.61	-0.3
2,705,608	-		ABIE53_006339	0.61	-0.0
2,705,666	+		ABIE53_006339	0.65	+1.0
2,705,666	+		ABIE53_006339	0.65	-0.4
2,705,667	-		ABIE53_006339	0.65	+1.3
2,705,667	-		ABIE53_006339	0.65	-0.0
2,705,770	+		ABIE53_006339	0.72	-2.4
2,705,771	-		ABIE53_006339	0.72	+1.5
2,705,771	-		ABIE53_006339	0.72	+1.0
2,705,779	+		ABIE53_006339	0.72	+1.5
2,705,780	-		ABIE53_006339	0.73	+0.9
2,705,836	+		ABIE53_006339	0.76	+3.8
2,705,843	-		ABIE53_006339	0.77	-0.6
2,705,843	-		ABIE53_006339	0.77	-0.6
2,705,843	-		ABIE53_006339	0.77	-0.0
2,706,194	+				+2.6
2,706,195	-				+0.1
2,706,371	+		ABIE53_006340	0.11	+1.0
2,706,372	-		ABIE53_006340	0.11	+1.0
2,706,397	-		ABIE53_006340	0.13	+2.2
2,706,500	+		ABIE53_006340	0.20	-0.0
2,706,501	-		ABIE53_006340	0.20	-1.6
2,706,504	+		ABIE53_006340	0.21	-2.5
2,706,504	+		ABIE53_006340	0.21	+0.3
2,706,504	+		ABIE53_006340	0.21	+3.3
2,706,504	+		ABIE53_006340	0.21	+1.0
2,706,504	+		ABIE53_006340	0.21	+1.0
2,706,504	+		ABIE53_006340	0.21	+0.8
2,706,504	+		ABIE53_006340	0.21	-0.8
2,706,505	-		ABIE53_006340	0.21	+0.7
2,706,505	-		ABIE53_006340	0.21	-0.4
2,706,505	-		ABIE53_006340	0.21	-0.0
2,706,505	-		ABIE53_006340	0.21	-0.1
2,706,505	-		ABIE53_006340	0.21	+2.0
2,706,534	+		ABIE53_006340	0.23	-0.8
2,706,534	+		ABIE53_006340	0.23	+2.6
2,706,535	-		ABIE53_006340	0.23	-0.0
2,706,802	+		ABIE53_006340	0.42	-1.6
2,706,802	+		ABIE53_006340	0.42	-2.1
2,707,050	+		ABIE53_006340	0.60	+1.0
2,707,181	+		ABIE53_006340	0.69	-1.6
2,707,182	-		ABIE53_006340	0.69	+1.3
2,707,182	-		ABIE53_006340	0.69	-0.6
2,707,182	-		ABIE53_006340	0.69	+1.0