Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006174

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,523,702	+		ABIE53_006173	0.75	-0.0
2,523,702	+		ABIE53_006173	0.75	+1.0
2,523,702	+		ABIE53_006173	0.75	+0.9
2,523,703	-		ABIE53_006173	0.75	-0.6
2,523,703	-		ABIE53_006173	0.75	+1.0
2,523,713	+		ABIE53_006173	0.76	-1.3
2,523,714	-		ABIE53_006173	0.76	+1.4
2,524,059	-				+1.0
2,524,062	+				-2.0
2,524,062	+				-1.0
2,524,062	+				-0.8
2,524,062	+				-2.6
2,524,063	-				+1.0
2,524,063	-				-0.6
2,524,063	-				-1.8
2,524,063	-				+1.0
2,524,067	+				-1.3
2,524,067	+				-2.0
2,524,067	+				-0.0
2,524,068	-				+1.0
2,524,068	-				-2.3
2,524,068	-				+1.0
2,524,108	-				-2.7
2,524,133	-				-3.6
2,524,143	+				-1.0
2,524,144	-				-2.6
2,524,144	-				+1.0
2,524,167	+				+2.0
2,524,167	+				-2.9
2,524,168	-				-0.2
2,524,168	-				-0.5
2,524,251	-				+1.0
2,524,612	+				-1.6
2,524,613	-				+1.0
2,524,613	-				+0.4
2,524,616	-				+1.0
2,524,616	-				-0.1
2,524,638	+				-3.3
2,524,651	+				-1.4
2,524,651	+				-1.6
2,524,651	+				-0.0
2,524,653	+				+0.3
2,524,653	+				-0.0
2,524,654	-				-2.3
2,524,654	-				-0.6
2,524,654	-				+2.0
2,524,654	-				-1.0
2,524,654	-				-2.7
2,524,670	+				-0.6
2,524,670	+				+1.0
2,524,671	-				+1.0
2,524,671	-				+1.0
2,524,671	-				+1.0
2,524,747	+				-2.3
2,524,748	-				+2.0
2,525,007	-		ABIE53_006174	0.43	+0.3
2,525,176	-		ABIE53_006174	0.65	-0.0
2,525,244	-		ABIE53_006174	0.74	-1.3
2,525,244	-		ABIE53_006174	0.74	+0.6
2,525,393	-				+2.0
2,525,393	-				+1.4
2,525,442	-				+1.0
2,525,652	+				-1.8
2,525,653	-				+3.3
2,525,762	+		ABIE53_006175	0.13	-1.5
2,525,762	+		ABIE53_006175	0.13	-0.2
2,525,763	-		ABIE53_006175	0.13	+1.0
2,525,763	-		ABIE53_006175	0.13	-2.1
2,525,763	-		ABIE53_006175	0.13	-0.0
2,525,763	-		ABIE53_006175	0.13	-0.0
2,525,763	-		ABIE53_006175	0.13	-2.8
2,525,763	-		ABIE53_006175	0.13	-0.0
2,525,763	-		ABIE53_006175	0.13	+1.0
2,525,764	+		ABIE53_006175	0.13	+1.0
2,525,764	+		ABIE53_006175	0.13	-1.6
2,526,026	-		ABIE53_006175	0.23	-0.0
2,526,026	-		ABIE53_006175	0.23	+2.0
2,526,026	-		ABIE53_006175	0.23	+1.0
2,526,138	+		ABIE53_006175	0.28	+0.4
2,526,138	+		ABIE53_006175	0.28	-2.9
2,526,348	+		ABIE53_006175	0.36	-0.7
2,526,349	-		ABIE53_006175	0.36	-0.6
2,526,349	-		ABIE53_006175	0.36	-1.3
2,526,419	+		ABIE53_006175	0.39	-0.0
2,526,420	-		ABIE53_006175	0.39	-0.0