Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006124

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,462,256	+		ABIE53_006122	0.70	-0.0
2,462,257	-		ABIE53_006122	0.71	-0.6
2,462,257	-		ABIE53_006122	0.71	-0.0
2,462,257	-		ABIE53_006122	0.71	+0.2
2,462,287	-		ABIE53_006122	0.77	-1.8
2,462,287	-		ABIE53_006122	0.77	-1.0
2,462,391	+				-3.6
2,462,391	+				+1.0
2,462,392	-				-0.4
2,462,392	-				+2.0
2,462,392	-				-0.0
2,462,643	-				+2.0
2,462,894	+		ABIE53_006123	0.42	-0.6
2,462,894	+		ABIE53_006123	0.42	-2.0
2,462,934	-		ABIE53_006123	0.56	-2.0
2,462,934	-		ABIE53_006123	0.56	-0.0
2,462,934	-		ABIE53_006123	0.56	-0.6
2,462,982	-		ABIE53_006123	0.72	-0.6
2,463,041	-				-2.2
2,463,264	+		ABIE53_006124	0.11	-0.0
2,463,264	+		ABIE53_006124	0.11	+1.0
2,463,264	+		ABIE53_006124	0.11	-3.0
2,463,274	+		ABIE53_006124	0.11	+2.0
2,463,275	-		ABIE53_006124	0.11	-0.4
2,463,357	+		ABIE53_006124	0.19	+0.1
2,463,447	+		ABIE53_006124	0.26	-0.8
2,463,447	+		ABIE53_006124	0.26	-0.0
2,463,485	-		ABIE53_006124	0.30	-0.2
2,463,487	-		ABIE53_006124	0.30	-2.3
2,463,604	+		ABIE53_006124	0.40	-2.7
2,463,604	+		ABIE53_006124	0.40	-0.0
2,463,605	-		ABIE53_006124	0.40	-0.0
2,463,605	-		ABIE53_006124	0.40	+2.0
2,463,625	-		ABIE53_006124	0.42	-2.2
2,463,640	-		ABIE53_006124	0.43	+1.0
2,463,640	-		ABIE53_006124	0.43	-0.6
2,463,703	-		ABIE53_006124	0.49	-1.3
2,463,793	+		ABIE53_006124	0.57	-0.0
2,463,897	+		ABIE53_006124	0.66	+0.4
2,463,898	-		ABIE53_006124	0.66	-2.9
2,463,975	+		ABIE53_006124	0.72	-0.0
2,463,975	+		ABIE53_006124	0.72	-1.8
2,464,025	+		ABIE53_006124	0.77	-0.0
2,464,026	-		ABIE53_006124	0.77	-1.4
2,464,026	-		ABIE53_006124	0.77	-0.6
2,464,046	+		ABIE53_006124	0.79	-0.0
2,464,164	+		ABIE53_006124	0.89	-2.8
2,464,165	-		ABIE53_006124	0.89	-3.2
2,464,165	-		ABIE53_006124	0.89	-1.3
2,464,310	-				-0.0
2,464,429	-				+0.9
2,464,478	+				-1.3
2,464,561	-				+1.0
2,464,706	+		ABIE53_006125	0.15	+2.6
2,464,748	-		ABIE53_006125	0.20	+1.0
2,464,748	-		ABIE53_006125	0.20	+1.0
2,464,845	+		ABIE53_006125	0.30	-0.0
2,464,845	+		ABIE53_006125	0.30	-1.0
2,464,845	+		ABIE53_006125	0.30	-2.7
2,464,846	-		ABIE53_006125	0.30	+1.0
2,465,070	+		ABIE53_006125	0.54	-0.0
2,465,070	+		ABIE53_006125	0.54	-1.3
2,465,071	-		ABIE53_006125	0.54	+2.6
2,465,071	-		ABIE53_006125	0.54	-0.2
2,465,072	+		ABIE53_006125	0.54	+2.0
2,465,264	+		ABIE53_006125	0.74	-1.3