Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005829

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,135,348	+		ABIE53_005828	0.35	-0.3
2,135,477	+		ABIE53_005828	0.49	-1.1
2,135,477	+		ABIE53_005828	0.49	+1.0
2,135,477	+		ABIE53_005828	0.49	-1.8
2,135,477	+		ABIE53_005828	0.49	-0.0
2,135,478	-		ABIE53_005828	0.49	+1.6
2,135,478	-		ABIE53_005828	0.49	+1.0
2,135,478	-		ABIE53_005828	0.49	+1.0
2,135,478	-		ABIE53_005828	0.49	+0.4
2,135,478	-		ABIE53_005828	0.49	-1.5
2,135,548	+		ABIE53_005828	0.56	+2.6
2,135,549	-		ABIE53_005828	0.56	+2.0
2,135,549	-		ABIE53_005828	0.56	-0.4
2,135,627	+		ABIE53_005828	0.65	-0.0
2,135,627	+		ABIE53_005828	0.65	+1.0
2,135,628	-		ABIE53_005828	0.65	+1.0
2,135,733	-		ABIE53_005828	0.76	-2.6
2,135,803	+		ABIE53_005828	0.84	-3.2
2,135,803	+		ABIE53_005828	0.84	+0.6
2,135,803	+		ABIE53_005828	0.84	-0.0
2,135,804	-		ABIE53_005828	0.84	+1.0
2,135,804	-		ABIE53_005828	0.84	+1.0
2,135,980	-				-2.0
2,136,067	-				-1.3
2,136,212	+				-1.2
2,136,212	+				+0.4
2,136,212	+				+1.0
2,136,212	+				+2.4
2,136,212	+				+1.0
2,136,214	+				+1.0
2,136,214	+				+0.5
2,136,214	+				+0.2
2,136,215	-				+1.5
2,136,215	-				-1.5
2,136,334	+		ABIE53_005829	0.55	-1.0
2,136,477	-				+1.0
2,136,511	-				+1.0
2,136,594	+		ABIE53_005830	0.16	-0.0
2,136,594	+		ABIE53_005830	0.16	-1.6
2,136,594	+		ABIE53_005830	0.16	-2.2
2,136,594	+		ABIE53_005830	0.16	-2.8
2,136,595	-		ABIE53_005830	0.16	-1.0
2,136,595	-		ABIE53_005830	0.16	-1.9
2,136,624	+		ABIE53_005830	0.19	+1.0
2,136,625	-		ABIE53_005830	0.19	-0.0
2,136,661	+		ABIE53_005830	0.22	-1.6
2,136,662	-		ABIE53_005830	0.22	-2.9
2,136,713	-		ABIE53_005830	0.26	-1.9
2,136,790	+		ABIE53_005830	0.32	-2.0
2,136,790	+		ABIE53_005830	0.32	+1.2
2,136,791	-		ABIE53_005830	0.32	-1.9
2,136,903	+		ABIE53_005830	0.41	-0.9
2,136,903	+		ABIE53_005830	0.41	-0.6
2,136,904	-		ABIE53_005830	0.41	-0.0
2,136,904	-		ABIE53_005830	0.41	-2.0
2,136,904	-		ABIE53_005830	0.41	-0.6
2,136,904	-		ABIE53_005830	0.41	+1.0
2,137,051	+		ABIE53_005830	0.53	+0.6
2,137,051	+		ABIE53_005830	0.53	-2.5
2,137,074	-		ABIE53_005830	0.55	+1.0
2,137,096	+		ABIE53_005830	0.57	+0.4
2,137,139	-		ABIE53_005830	0.60	-3.6
2,137,150	+		ABIE53_005830	0.61	+1.0
2,137,151	-		ABIE53_005830	0.61	-1.2
2,137,381	-		ABIE53_005830	0.80	+1.0
2,137,381	-		ABIE53_005830	0.80	-2.0
2,137,381	-		ABIE53_005830	0.80	+2.5
2,137,394	+		ABIE53_005830	0.81	-0.1
2,137,394	+		ABIE53_005830	0.81	+1.0
2,137,395	-		ABIE53_005830	0.81	+1.0
2,137,395	-		ABIE53_005830	0.81	+1.0
2,137,395	-		ABIE53_005830	0.81	-1.6