Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005313

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
1,569,893	+		ABIE53_005312	0.26	-1.9
1,569,894	-		ABIE53_005312	0.27	-0.2
1,570,198	+		ABIE53_005312	0.69	+1.8
1,570,198	+		ABIE53_005312	0.69	-2.2
1,570,198	+		ABIE53_005312	0.69	-0.5
1,570,381	+				-0.6
1,570,381	+				-1.8
1,570,381	+				-0.8
1,570,382	-				+0.8
1,570,382	-				+0.2
1,570,471	+				-3.5
1,570,471	+				-0.8
1,570,472	-				+1.2
1,570,472	-				-1.4
1,570,565	+				+2.2
1,570,588	+				-1.2
1,570,718	+				-0.8
1,570,719	-				-0.2
1,570,719	-				+0.8
1,570,945	+		ABIE53_005313	0.19	-0.4
1,570,945	+		ABIE53_005313	0.19	-2.6
1,571,292	-		ABIE53_005313	0.50	-1.5
1,571,868	+				+0.8
1,571,869	-				-0.2
1,571,924	+				-3.1
1,571,924	+				-1.1
1,571,950	+				-1.2
1,571,950	+				-1.2
1,571,951	-				+0.8
1,571,951	-				-3.6
1,572,055	+		ABIE53_005314	0.13	-1.3
1,572,056	-		ABIE53_005314	0.13	+0.8
1,572,436	+		ABIE53_005314	0.42	+0.8
1,572,592	+		ABIE53_005314	0.54	-0.2
1,572,592	+		ABIE53_005314	0.54	-0.2
1,572,619	+		ABIE53_005314	0.57	-0.2
1,572,619	+		ABIE53_005314	0.57	+0.2
1,572,620	-		ABIE53_005314	0.57	-0.5
1,572,620	-		ABIE53_005314	0.57	+0.9
1,572,835	+		ABIE53_005314	0.73	+2.4
1,572,835	+		ABIE53_005314	0.73	+0.8
1,572,836	-		ABIE53_005314	0.73	+0.8
1,572,836	-		ABIE53_005314	0.73	-0.5
1,572,836	-		ABIE53_005314	0.73	-0.2