Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005228

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
1,485,217	+		ABIE53_005227	0.43	-0.2
1,485,658	-		ABIE53_005227	0.73	+0.8
1,485,663	-		ABIE53_005227	0.74	-0.6
1,485,663	-		ABIE53_005227	0.74	-1.7
1,485,682	-		ABIE53_005227	0.75	-0.8
1,485,685	+		ABIE53_005227	0.75	-1.9
1,485,720	+		ABIE53_005227	0.78	-0.2
1,486,057	+				-2.8
1,486,376	-		ABIE53_005228	0.40	-1.2
1,486,421	+		ABIE53_005228	0.46	-2.4
1,486,422	-		ABIE53_005228	0.46	+3.6
1,486,422	-		ABIE53_005228	0.46	+1.8
1,486,501	+		ABIE53_005228	0.56	-2.2
1,486,502	-		ABIE53_005228	0.56	-0.2
1,486,502	-		ABIE53_005228	0.56	+2.4
1,486,502	-		ABIE53_005228	0.56	-1.8
1,486,547	+		ABIE53_005228	0.62	+0.4
1,486,548	-		ABIE53_005228	0.62	+0.8
1,486,749	+		ABIE53_005228	0.89	+1.8
1,486,750	-		ABIE53_005228	0.89	+0.8
1,487,020	+		ABIE53_005229	0.24	-0.8
1,487,020	+		ABIE53_005229	0.24	-2.1
1,487,020	+		ABIE53_005229	0.24	-0.8
1,487,020	+		ABIE53_005229	0.24	+0.8
1,487,179	+		ABIE53_005229	0.44	+2.4
1,487,182	-		ABIE53_005229	0.45	-1.5
1,487,390	-		ABIE53_005229	0.71	-0.5
1,487,390	-		ABIE53_005229	0.71	+0.4
1,487,390	-		ABIE53_005229	0.71	+1.1
1,487,419	+		ABIE53_005229	0.75	-1.1
1,487,420	-		ABIE53_005229	0.75	-2.0
1,487,485	+		ABIE53_005229	0.83	+0.2
1,487,486	-		ABIE53_005229	0.83	+1.8
1,487,486	-		ABIE53_005229	0.83	+0.8
1,487,682	+				+1.8
1,487,762	+				+0.6
1,487,762	+				-0.5
1,487,762	+				+2.8
1,487,763	-				+0.8