Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005141

Experiment: Shikimic Acid 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_005139 and ABIE53_005140 are separated by 35 nucleotidesABIE53_005140 and ABIE53_005141 overlap by 4 nucleotidesABIE53_005141 and ABIE53_005142 are separated by 31 nucleotidesABIE53_005142 and ABIE53_005143 overlap by 53 nucleotides ABIE53_005139: ABIE53_005139 - gamma-glutamylputrescine oxidase, at 1,392,457 to 1,393,815 _005139 ABIE53_005140: ABIE53_005140 - putative spermidine/putrescine transport system permease protein, at 1,393,851 to 1,394,723 _005140 ABIE53_005141: ABIE53_005141 - putative spermidine/putrescine transport system permease protein, at 1,394,720 to 1,395,514 _005141 ABIE53_005142: ABIE53_005142 - acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase, at 1,395,546 to 1,396,097 _005142 ABIE53_005143: ABIE53_005143 - acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase, at 1,396,045 to 1,396,974 _005143 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1394.049 kb on + strand, within ABIE53_005140at 1394.049 kb on + strand, within ABIE53_005140at 1394.049 kb on + strand, within ABIE53_005140at 1394.050 kb on - strand, within ABIE53_005140at 1394.130 kb on + strand, within ABIE53_005140at 1394.130 kb on + strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.170 kb on + strand, within ABIE53_005140at 1394.170 kb on + strand, within ABIE53_005140at 1394.171 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.300 kb on - strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.376 kb on + strand, within ABIE53_005140at 1394.377 kb on - strand, within ABIE53_005140at 1394.607 kb on + strand, within ABIE53_005140at 1394.608 kb on - strand, within ABIE53_005140at 1394.673 kb on + strandat 1394.859 kb on - strand, within ABIE53_005141at 1394.874 kb on - strand, within ABIE53_005141at 1395.351 kb on + strand, within ABIE53_005141at 1395.568 kb on - strandat 1395.764 kb on - strand, within ABIE53_005142at 1395.775 kb on - strand, within ABIE53_005142at 1395.775 kb on - strand, within ABIE53_005142at 1396.176 kb on - strand, within ABIE53_005143

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Shikimic Acid 5 mM (C)
remove
1,394,049 + ABIE53_005140 0.23 -1.3
1,394,049 + ABIE53_005140 0.23 +0.7
1,394,049 + ABIE53_005140 0.23 -3.6
1,394,050 - ABIE53_005140 0.23 +0.1
1,394,130 + ABIE53_005140 0.32 +0.7
1,394,130 + ABIE53_005140 0.32 -0.8
1,394,131 - ABIE53_005140 0.32 -1.7
1,394,131 - ABIE53_005140 0.32 -0.3
1,394,131 - ABIE53_005140 0.32 -1.2
1,394,170 + ABIE53_005140 0.37 +1.7
1,394,170 + ABIE53_005140 0.37 -1.1
1,394,171 - ABIE53_005140 0.37 +1.5
1,394,186 - ABIE53_005140 0.38 +0.7
1,394,186 - ABIE53_005140 0.38 -1.9
1,394,186 - ABIE53_005140 0.38 -0.3
1,394,186 - ABIE53_005140 0.38 -5.4
1,394,220 + ABIE53_005140 0.42 -1.1
1,394,220 + ABIE53_005140 0.42 +0.7
1,394,220 + ABIE53_005140 0.42 -1.5
1,394,221 - ABIE53_005140 0.42 -0.3
1,394,221 - ABIE53_005140 0.42 -3.2
1,394,221 - ABIE53_005140 0.42 -0.3
1,394,300 - ABIE53_005140 0.51 +1.1
1,394,345 + ABIE53_005140 0.57 -0.3
1,394,345 + ABIE53_005140 0.57 -0.1
1,394,345 + ABIE53_005140 0.57 -0.5
1,394,345 + ABIE53_005140 0.57 +1.2
1,394,345 + ABIE53_005140 0.57 +1.0
1,394,345 + ABIE53_005140 0.57 -1.9
1,394,346 - ABIE53_005140 0.57 +0.7
1,394,346 - ABIE53_005140 0.57 -0.3
1,394,346 - ABIE53_005140 0.57 +1.1
1,394,376 + ABIE53_005140 0.60 +0.7
1,394,377 - ABIE53_005140 0.60 -1.3
1,394,607 + ABIE53_005140 0.87 +0.7
1,394,608 - ABIE53_005140 0.87 +1.7
1,394,673 + -0.1
1,394,859 - ABIE53_005141 0.17 +3.0
1,394,874 - ABIE53_005141 0.19 +1.9
1,395,351 + ABIE53_005141 0.79 -1.8
1,395,568 - +0.1
1,395,764 - ABIE53_005142 0.39 -2.1
1,395,775 - ABIE53_005142 0.41 -1.6
1,395,775 - ABIE53_005142 0.41 +0.7
1,396,176 - ABIE53_005143 0.14 +1.7

Or see this region's nucleotide sequence