Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005069

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
1,313,009	+		ABIE53_005068	0.53	-2.3
1,313,009	+		ABIE53_005068	0.53	-4.5
1,313,009	+		ABIE53_005068	0.53	-2.5
1,313,010	-		ABIE53_005068	0.53	-4.6
1,313,010	-		ABIE53_005068	0.53	-2.9
1,313,010	-		ABIE53_005068	0.53	-1.9
1,313,010	-		ABIE53_005068	0.53	-2.6
1,313,010	-		ABIE53_005068	0.53	-3.5
1,313,010	-		ABIE53_005068	0.53	+0.7
1,313,010	-		ABIE53_005068	0.53	-2.6
1,313,010	-		ABIE53_005068	0.53	-3.3
1,313,010	-		ABIE53_005068	0.53	-4.3
1,313,010	-		ABIE53_005068	0.53	-2.1
1,313,142	+		ABIE53_005068	0.63	-0.3
1,313,143	-		ABIE53_005068	0.63	-0.3
1,313,143	-		ABIE53_005068	0.63	-3.1
1,313,143	-		ABIE53_005068	0.63	-0.0
1,313,269	+		ABIE53_005068	0.73	+0.7
1,313,505	+				-4.3
1,313,506	-				-2.9
1,313,521	-				-0.3
1,313,654	+				-1.3
1,313,654	+				-2.6
1,313,655	-				-3.2
1,313,655	-				-3.2
1,313,737	+				+0.7
1,313,737	+				+0.7
1,313,738	-				-0.3
1,313,738	-				-3.3
1,313,738	-				-3.4
1,313,738	-				-2.1
1,313,738	-				+0.7
1,313,810	-				-2.6
1,313,827	+				+0.7
1,313,827	+				+0.7
1,313,828	-				-4.1
1,313,828	-				-2.5
1,313,828	-				-1.4
1,313,828	-				-3.2
1,313,830	-				-4.5
1,313,830	-				-2.8
1,313,830	-				-0.9
1,313,830	-				-2.6
1,313,830	-				-2.6
1,313,886	+				-4.3
1,313,886	+				-2.0
1,313,886	+				-0.3
1,313,886	+				-2.9
1,313,886	+				-0.3
1,313,887	-				+0.1
1,313,887	-				-3.2
1,313,887	-				-2.6
1,313,887	-				-1.7
1,313,887	-				-1.6
1,313,891	+				-2.1
1,313,892	-				-3.5
1,313,963	+				+0.5
1,313,963	+				-1.0
1,313,964	-				-2.7
1,313,964	-				-0.9
1,314,000	+				-3.3
1,314,000	+				-0.3
1,314,001	-				-3.3
1,314,001	-				-0.3
1,314,073	+		ABIE53_005069	0.31	-0.5
1,314,073	+		ABIE53_005069	0.31	+0.7
1,314,073	+		ABIE53_005069	0.31	+0.7
1,314,170	+		ABIE53_005069	0.75	+0.0
1,314,175	+		ABIE53_005069	0.78	-0.6
1,314,175	+		ABIE53_005069	0.78	+0.7
1,314,175	+		ABIE53_005069	0.78	-1.7
1,314,175	+		ABIE53_005069	0.78	+0.7
1,314,175	+		ABIE53_005069	0.78	+0.4
1,314,175	+		ABIE53_005069	0.78	+0.1
1,314,175	+		ABIE53_005069	0.78	-0.1
1,314,175	+		ABIE53_005069	0.78	+0.5
1,314,175	+		ABIE53_005069	0.78	+1.7
1,314,175	+		ABIE53_005069	0.78	+0.5
1,314,175	+		ABIE53_005069	0.78	+1.3
1,314,175	+		ABIE53_005069	0.78	-0.4
1,314,175	+		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	-1.3
1,314,176	-		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	+0.7
1,314,176	-		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	+0.7
1,314,176	-		ABIE53_005069	0.78	+0.7
1,314,176	-		ABIE53_005069	0.78	-2.1
1,314,176	-		ABIE53_005069	0.78	-1.3
1,314,176	-		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	-0.3
1,314,176	-		ABIE53_005069	0.78	+0.7
1,314,176	-		ABIE53_005069	0.78	-3.1
1,314,176	-		ABIE53_005069	0.78	+0.7
1,314,176	-		ABIE53_005069	0.78	+1.7
1,314,260	+				-1.5
1,314,294	+		ABIE53_005070	0.13	-1.3
1,314,294	+		ABIE53_005070	0.13	-0.1
1,314,294	+		ABIE53_005070	0.13	-1.1
1,314,294	+		ABIE53_005070	0.13	-1.5
1,314,294	+		ABIE53_005070	0.13	-0.8
1,314,295	-		ABIE53_005070	0.13	-2.3
1,314,333	+		ABIE53_005070	0.18	-0.6
1,314,333	+		ABIE53_005070	0.18	-0.6
1,314,333	+		ABIE53_005070	0.18	-0.7
1,314,333	+		ABIE53_005070	0.18	-0.7
1,314,333	+		ABIE53_005070	0.18	-0.9
1,314,333	+		ABIE53_005070	0.18	-1.0
1,314,334	-		ABIE53_005070	0.18	-0.9
1,314,471	+		ABIE53_005070	0.38	-0.9
1,314,471	+		ABIE53_005070	0.38	-1.1
1,314,471	+		ABIE53_005070	0.38	-1.2
1,314,471	+		ABIE53_005070	0.38	-1.0
1,314,471	+		ABIE53_005070	0.38	-1.9
1,314,471	+		ABIE53_005070	0.38	-2.7
1,314,471	+		ABIE53_005070	0.38	-0.2
1,314,472	-		ABIE53_005070	0.38	+0.7
1,314,472	-		ABIE53_005070	0.38	-0.3
1,314,472	-		ABIE53_005070	0.38	+0.7
1,314,645	+		ABIE53_005070	0.62	-1.4
1,314,645	+		ABIE53_005070	0.62	+0.3
1,314,725	+		ABIE53_005070	0.73	-0.3
1,314,725	+		ABIE53_005070	0.73	+0.4
1,314,857	+				-1.3
1,314,857	+				-1.3
1,314,857	+				+1.1
1,314,929	+				-0.0
1,314,935	+				-0.9
1,314,935	+				-0.6
1,314,935	+				+0.7
1,314,936	-				+1.1
1,314,936	-				-0.3
1,314,949	-				-3.3
1,314,949	-				-0.8
1,314,949	-				+0.1
1,314,952	+				+0.5
1,314,952	+				+1.2
1,314,953	-				-0.3
1,314,953	-				+0.7
1,314,957	+				-1.7
1,314,957	+				-0.3
1,314,957	+				-1.3
1,314,957	+				+2.7
1,314,957	+				+0.7
1,314,958	-				-4.0
1,314,958	-				-2.0
1,314,958	-				-1.7
1,315,014	+				-0.3
1,315,014	+				-1.5
1,315,014	+				-1.8
1,315,014	+				+1.4
1,315,014	+				-0.8
1,315,014	+				+0.7
1,315,015	-				-0.9
1,315,015	-				+0.7
1,315,015	-				+0.0
1,315,015	-				-1.1
1,315,015	-				-0.6