Experiment: Shikimic Acid 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004778 and ABIE53_004779 are separated by 72 nucleotides ABIE53_004779 and ABIE53_004780 overlap by 4 nucleotides ABIE53_004780 and ABIE53_004781 are separated by 20 nucleotides
ABIE53_004778: ABIE53_004778 - erythritol transport system substrate-binding protein, at 982,498 to 983,442
_004778
ABIE53_004779: ABIE53_004779 - putative lipoprotein, at 983,515 to 984,150
_004779
ABIE53_004780: ABIE53_004780 - erythritol transport system ATP-binding protein, at 984,147 to 985,685
_004780
ABIE53_004781: ABIE53_004781 - erythritol transport system permease protein, at 985,706 to 986,788
_004781
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.235 kb on + strand, within ABIE53_004778 at 983.235 kb on + strand, within ABIE53_004778 at 983.335 kb on + strand, within ABIE53_004778 at 983.335 kb on + strand, within ABIE53_004778 at 983.336 kb on - strand, within ABIE53_004778 at 983.394 kb on + strand at 983.428 kb on + strand at 983.428 kb on + strand at 983.429 kb on - strand at 983.432 kb on - strand at 983.441 kb on - strand at 983.441 kb on - strand at 983.462 kb on - strand at 983.534 kb on + strand at 983.535 kb on - strand at 983.758 kb on + strand, within ABIE53_004779 at 983.759 kb on - strand, within ABIE53_004779 at 983.801 kb on + strand, within ABIE53_004779 at 983.801 kb on + strand, within ABIE53_004779 at 983.820 kb on + strand, within ABIE53_004779 at 983.855 kb on + strand, within ABIE53_004779 at 983.856 kb on - strand, within ABIE53_004779 at 983.856 kb on - strand, within ABIE53_004779 at 983.856 kb on - strand, within ABIE53_004779 at 983.931 kb on + strand, within ABIE53_004779 at 983.965 kb on + strand, within ABIE53_004779 at 983.999 kb on + strand, within ABIE53_004779 at 984.057 kb on + strand, within ABIE53_004779 at 984.090 kb on - strand at 984.210 kb on + strand at 984.243 kb on + strand at 984.243 kb on + strand at 984.243 kb on + strand at 984.352 kb on + strand, within ABIE53_004780 at 984.353 kb on - strand, within ABIE53_004780 at 984.353 kb on - strand, within ABIE53_004780 at 984.449 kb on + strand, within ABIE53_004780 at 984.449 kb on + strand, within ABIE53_004780 at 984.450 kb on - strand, within ABIE53_004780 at 984.502 kb on + strand, within ABIE53_004780 at 984.502 kb on + strand, within ABIE53_004780 at 984.503 kb on - strand, within ABIE53_004780 at 984.538 kb on + strand, within ABIE53_004780 at 984.539 kb on - strand, within ABIE53_004780 at 984.539 kb on - strand, within ABIE53_004780 at 984.595 kb on - strand, within ABIE53_004780 at 984.595 kb on - strand, within ABIE53_004780 at 984.753 kb on + strand, within ABIE53_004780 at 984.754 kb on - strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.978 kb on + strand, within ABIE53_004780 at 984.979 kb on - strand, within ABIE53_004780 at 985.109 kb on - strand, within ABIE53_004780 at 985.109 kb on - strand, within ABIE53_004780 at 985.319 kb on + strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.472 kb on - strand, within ABIE53_004780 at 985.492 kb on - strand, within ABIE53_004780 at 985.492 kb on - strand, within ABIE53_004780 at 985.536 kb on + strand at 985.844 kb on - strand, within ABIE53_004781 at 986.019 kb on - strand, within ABIE53_004781 at 986.019 kb on - strand, within ABIE53_004781 at 986.129 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.183 kb on + strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.184 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.388 kb on - strand, within ABIE53_004781 at 986.459 kb on + strand, within ABIE53_004781 at 986.459 kb on + strand, within ABIE53_004781 at 986.677 kb on + strand, within ABIE53_004781
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid 5 mM (C) remove 983,235 + ABIE53_004778 0.78 -0.5 983,235 + ABIE53_004778 0.78 -0.0 983,335 + ABIE53_004778 0.89 -1.5 983,335 + ABIE53_004778 0.89 -0.4 983,336 - ABIE53_004778 0.89 +0.5 983,394 + -1.0 983,428 + -0.1 983,428 + +0.6 983,429 - -2.4 983,432 - +0.6 983,441 - -1.3 983,441 - -0.4 983,462 - -1.4 983,534 + -2.5 983,535 - -0.8 983,758 + ABIE53_004779 0.38 +0.8 983,759 - ABIE53_004779 0.38 +0.6 983,801 + ABIE53_004779 0.45 +2.6 983,801 + ABIE53_004779 0.45 -0.4 983,820 + ABIE53_004779 0.48 -0.8 983,855 + ABIE53_004779 0.53 -0.4 983,856 - ABIE53_004779 0.54 -1.0 983,856 - ABIE53_004779 0.54 -0.4 983,856 - ABIE53_004779 0.54 -2.8 983,931 + ABIE53_004779 0.65 -1.0 983,965 + ABIE53_004779 0.71 +1.1 983,999 + ABIE53_004779 0.76 +1.6 984,057 + ABIE53_004779 0.85 -1.2 984,090 - -0.2 984,210 + -1.3 984,243 + -0.4 984,243 + -0.3 984,243 + -0.8 984,352 + ABIE53_004780 0.13 +0.2 984,353 - ABIE53_004780 0.13 -0.4 984,353 - ABIE53_004780 0.13 +0.6 984,449 + ABIE53_004780 0.20 +0.6 984,449 + ABIE53_004780 0.20 -1.5 984,450 - ABIE53_004780 0.20 +0.6 984,502 + ABIE53_004780 0.23 +0.6 984,502 + ABIE53_004780 0.23 -0.4 984,503 - ABIE53_004780 0.23 -2.0 984,538 + ABIE53_004780 0.25 -1.9 984,539 - ABIE53_004780 0.25 -1.4 984,539 - ABIE53_004780 0.25 -0.8 984,595 - ABIE53_004780 0.29 -2.2 984,595 - ABIE53_004780 0.29 -1.3 984,753 + ABIE53_004780 0.39 -0.1 984,754 - ABIE53_004780 0.39 +0.6 984,978 + ABIE53_004780 0.54 -0.4 984,978 + ABIE53_004780 0.54 -1.3 984,978 + ABIE53_004780 0.54 +0.8 984,979 - ABIE53_004780 0.54 -1.1 985,109 - ABIE53_004780 0.63 -0.4 985,109 - ABIE53_004780 0.63 +1.1 985,319 + ABIE53_004780 0.76 -0.2 985,472 - ABIE53_004780 0.86 -2.0 985,472 - ABIE53_004780 0.86 -2.6 985,472 - ABIE53_004780 0.86 -0.4 985,492 - ABIE53_004780 0.87 -1.3 985,492 - ABIE53_004780 0.87 -3.4 985,536 + -1.6 985,844 - ABIE53_004781 0.13 +0.6 986,019 - ABIE53_004781 0.29 -0.6 986,019 - ABIE53_004781 0.29 +0.6 986,129 + ABIE53_004781 0.39 -0.0 986,183 + ABIE53_004781 0.44 -0.5 986,183 + ABIE53_004781 0.44 -1.2 986,183 + ABIE53_004781 0.44 -1.8 986,183 + ABIE53_004781 0.44 -0.1 986,183 + ABIE53_004781 0.44 -2.2 986,183 + ABIE53_004781 0.44 +0.6 986,183 + ABIE53_004781 0.44 -0.4 986,183 + ABIE53_004781 0.44 -1.4 986,183 + ABIE53_004781 0.44 +0.6 986,184 - ABIE53_004781 0.44 -1.0 986,184 - ABIE53_004781 0.44 +0.6 986,184 - ABIE53_004781 0.44 -0.4 986,184 - ABIE53_004781 0.44 +0.6 986,388 - ABIE53_004781 0.63 +0.6 986,388 - ABIE53_004781 0.63 -1.4 986,388 - ABIE53_004781 0.63 +0.2 986,459 + ABIE53_004781 0.70 -1.0 986,459 + ABIE53_004781 0.70 -1.0 986,677 + ABIE53_004781 0.90 -1.8
Or see this region's nucleotide sequence