Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004469

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
657,993	+		ABIE53_004468	0.32	-0.9
657,994	-		ABIE53_004468	0.32	-2.2
657,994	-		ABIE53_004468	0.32	-0.9
657,994	-		ABIE53_004468	0.32	+2.7
657,994	-		ABIE53_004468	0.32	-1.9
658,149	+		ABIE53_004468	0.43	+0.7
658,340	-		ABIE53_004468	0.57	+1.7
658,433	+		ABIE53_004468	0.64	+0.7
658,434	-		ABIE53_004468	0.64	-2.8
658,468	+		ABIE53_004468	0.67	+0.3
658,477	+		ABIE53_004468	0.67	-0.3
658,746	-		ABIE53_004468	0.87	-0.3
658,911	-				+1.7
658,911	-				-2.7
658,911	-				-0.8
658,955	+				+0.7
658,956	-				-3.2
659,049	+				+1.3
659,050	-				-1.3
659,103	+				+0.7
659,104	-				-0.3
659,212	+				+1.7
659,212	+				-0.8
659,406	-		ABIE53_004469	0.16	-0.9
659,597	+		ABIE53_004469	0.22	-2.1
659,598	-		ABIE53_004469	0.22	+0.7
659,771	-		ABIE53_004469	0.28	-0.9
659,798	-		ABIE53_004469	0.29	-0.9
659,937	+		ABIE53_004469	0.33	-0.3
660,150	+		ABIE53_004469	0.40	-0.3
660,151	-		ABIE53_004469	0.40	-0.6
660,151	-		ABIE53_004469	0.40	-2.2
660,194	+		ABIE53_004469	0.42	-0.3
660,215	+		ABIE53_004469	0.42	+0.7
660,215	+		ABIE53_004469	0.42	-1.3
660,394	-		ABIE53_004469	0.48	-0.9
660,394	-		ABIE53_004469	0.48	-1.3
660,394	-		ABIE53_004469	0.48	-0.3
660,637	+		ABIE53_004469	0.56	-0.6
660,638	-		ABIE53_004469	0.56	+1.3
660,638	-		ABIE53_004469	0.56	+1.7
660,772	+		ABIE53_004469	0.61	+0.7
660,773	-		ABIE53_004469	0.61	+0.1
660,776	+		ABIE53_004469	0.61	+3.0
660,776	+		ABIE53_004469	0.61	+0.2
660,777	-		ABIE53_004469	0.61	+1.7
660,794	+		ABIE53_004469	0.61	+0.7
660,806	+		ABIE53_004469	0.62	-0.3
660,807	-		ABIE53_004469	0.62	+0.7
660,807	-		ABIE53_004469	0.62	+1.7
660,992	+		ABIE53_004469	0.68	-2.5
660,992	+		ABIE53_004469	0.68	+2.5
661,072	+		ABIE53_004469	0.70	-1.3
661,073	-		ABIE53_004469	0.70	-1.3
661,073	-		ABIE53_004469	0.70	+0.7
661,114	-		ABIE53_004469	0.72	-1.3
661,114	-		ABIE53_004469	0.72	+0.7
661,193	-		ABIE53_004469	0.74	-0.3
661,223	-		ABIE53_004469	0.75	+2.3
661,328	-		ABIE53_004469	0.79	-1.3
661,358	+		ABIE53_004469	0.80	-2.7
661,391	-		ABIE53_004469	0.81	+0.7
661,412	+		ABIE53_004469	0.81	+0.7
661,413	-		ABIE53_004469	0.82	+2.3
661,486	-		ABIE53_004469	0.84	-0.9
661,493	+		ABIE53_004469	0.84	-0.9
661,494	-		ABIE53_004469	0.84	-0.3
661,494	-		ABIE53_004469	0.84	+1.3
661,578	-		ABIE53_004469	0.87	-0.9
661,694	+				+0.7
661,694	+				-0.3
661,694	+				-1.2
661,694	+				+0.6
661,695	-				+0.7
661,695	-				+0.0
661,695	-				-1.6
661,695	-				-0.8
661,805	-				-0.3
661,806	+				-2.6
661,806	+				-0.8
661,807	-				-0.6
661,807	-				+1.7
661,809	-				+0.7
661,809	-				-0.1
661,859	+				+0.7
661,859	+				-3.7
661,877	+				-0.7
661,922	-				-1.2
661,922	-				-1.3
661,922	-				-1.3
661,922	-				+0.7
661,977	+				-2.3
662,248	+		ABIE53_004470	0.30	-0.1
662,249	-		ABIE53_004470	0.30	-0.3
662,320	-		ABIE53_004470	0.40	-0.3
662,383	-		ABIE53_004470	0.48	-1.5
662,429	+		ABIE53_004470	0.54	-3.0
662,481	-		ABIE53_004470	0.61	+0.7
662,671	+		ABIE53_004470	0.86	+2.3
662,671	+		ABIE53_004470	0.86	-2.6
662,680	+		ABIE53_004470	0.88	-1.7
662,761	+				+0.7
662,762	-				+1.5
662,910	+				+1.3
662,910	+				+3.0
662,964	+		ABIE53_004471	0.11	-0.9