Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003162

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
3,576,106	-				-1.1
3,576,113	-				+0.0
3,576,113	-				-0.4
3,576,113	-				+0.2
3,576,113	-				+0.9
3,576,149	-				-0.4
3,576,149	-				-0.1
3,576,181	+				-2.0
3,576,182	-				-0.6
3,576,182	-				+0.4
3,576,182	-				-0.1
3,576,182	-				-0.6
3,576,182	-				-1.9
3,576,182	-				+0.6
3,576,182	-				-2.3
3,576,182	-				-0.4
3,576,182	-				-1.0
3,576,182	-				+2.2
3,576,182	-				-0.2
3,576,226	+				-1.2
3,576,226	+				+0.6
3,576,226	+				+0.6
3,576,226	+				+0.6
3,576,226	+				-0.3
3,576,226	+				-1.6
3,576,226	+				+0.6
3,576,226	+				+1.4
3,576,226	+				+0.0
3,576,226	+				-0.6
3,576,226	+				-0.4
3,576,226	+				+1.6
3,576,226	+				+1.6
3,576,226	+				+1.2
3,576,226	+				+0.6
3,576,227	-				-0.3
3,576,227	-				-1.7
3,576,227	-				-2.4
3,576,227	-				+2.6
3,576,227	-				-1.3
3,576,227	-				-0.1
3,576,227	-				-1.3
3,576,227	-				-2.6
3,576,227	-				-2.0
3,576,227	-				-1.0
3,576,227	-				-1.0
3,576,227	-				+0.6
3,576,228	+				-3.0
3,576,229	-				-0.6
3,576,232	+				+1.2
3,576,232	+				+0.6
3,576,233	-				-2.1
3,576,233	-				+0.0
3,576,233	-				-1.0
3,576,233	-				-1.0
3,576,233	-				-1.2
3,576,233	-				+1.8
3,576,233	-				+0.0
3,576,233	-				+0.2
3,576,233	-				-1.6
3,576,236	-				-3.1
3,576,236	-				+1.6
3,576,236	-				-1.0
3,576,427	-				-4.7
3,576,472	+				-0.5
3,576,472	+				-0.6
3,576,472	+				+1.6
3,576,472	+				+0.7
3,576,473	-				-3.1
3,576,473	-				-1.4
3,576,504	+				+0.6
3,576,504	+				+0.0
3,576,504	+				-3.1
3,576,504	+				-3.9
3,576,504	+				+0.6
3,576,504	+				-1.4
3,576,504	+				-2.6
3,576,504	+				-2.7
3,576,504	+				-2.8
3,576,504	+				-1.4
3,576,504	+				-0.4
3,576,504	+				-2.0
3,576,504	+				-0.5
3,576,506	+				-5.2
3,576,506	+				-0.4
3,576,506	+				-4.8
3,576,506	+				-0.4
3,576,506	+				-2.0
3,576,506	+				-1.8
3,576,506	+				-3.9
3,576,506	+				-2.7
3,576,520	+				-1.4
3,576,520	+				-0.8
3,576,520	+				-0.7
3,576,520	+				-0.4
3,576,591	+				-4.3
3,576,591	+				-3.9
3,576,621	+				-4.0
3,576,871	+		ABIE53_003162	0.44	-2.8
3,576,871	+		ABIE53_003162	0.44	-4.1
3,576,871	+		ABIE53_003162	0.44	-2.0
3,576,871	+		ABIE53_003162	0.44	-2.4
3,576,871	+		ABIE53_003162	0.44	-2.2
3,576,871	+		ABIE53_003162	0.44	-1.0
3,576,871	+		ABIE53_003162	0.44	-3.8
3,576,871	+		ABIE53_003162	0.44	-2.8
3,576,871	+		ABIE53_003162	0.44	-5.5
3,576,871	+		ABIE53_003162	0.44	-5.6
3,576,872	-		ABIE53_003162	0.44	-3.8
3,577,021	+		ABIE53_003162	0.67	-3.2
3,577,021	+		ABIE53_003162	0.67	-2.9
3,577,021	+		ABIE53_003162	0.67	-5.5
3,577,021	+		ABIE53_003162	0.67	-2.0
3,577,022	-		ABIE53_003162	0.67	-5.1
3,577,066	+		ABIE53_003162	0.74	-6.8
3,577,098	+		ABIE53_003162	0.79	+1.4
3,577,098	+		ABIE53_003162	0.79	-5.2
3,577,098	+		ABIE53_003162	0.79	-4.0
3,577,231	+				+0.6
3,577,231	+				+0.3
3,577,231	+				+0.8
3,577,231	+				+0.6
3,577,231	+				+2.9
3,577,231	+				+2.3
3,577,231	+				+0.3
3,577,231	+				+0.3
3,577,231	+				+0.9
3,577,232	-				-1.0
3,577,232	-				+2.2
3,577,250	+				-1.2
3,577,318	+				+2.2
3,577,318	+				-0.8
3,577,318	+				+0.6
3,577,318	+				-0.2
3,577,318	+				-0.4
3,577,318	+				-0.4
3,577,318	+				-1.0
3,577,318	+				+0.6
3,577,318	+				-1.3
3,577,318	+				+0.6
3,577,318	+				+2.6
3,577,318	+				+2.2
3,577,318	+				-1.4
3,577,318	+				-1.2
3,577,318	+				-1.8
3,577,319	-				-1.1
3,577,319	-				-1.4
3,577,319	-				-1.0
3,577,319	-				+0.6
3,577,319	-				-0.4
3,577,319	-				-0.4
3,577,319	-				+0.6
3,577,319	-				+1.6
3,577,319	-				-3.0
3,577,319	-				-2.4
3,577,319	-				-1.2
3,577,319	-				-1.0
3,577,319	-				-0.4
3,577,319	-				-0.4
3,577,319	-				-2.7
3,577,319	-				-1.1
3,577,319	-				-3.4
3,577,319	-				-3.6
3,577,319	-				-0.4
3,577,320	+				+0.5
3,577,320	+				-2.7
3,577,320	+				+1.6
3,577,320	+				-2.0
3,577,320	+				+1.6
3,577,320	+				-0.4
3,577,320	+				-2.8
3,577,320	+				-1.9
3,577,320	+				-2.6
3,577,320	+				-2.9
3,577,320	+				+0.6
3,577,320	+				-0.4
3,577,320	+				-1.7
3,577,320	+				-0.6
3,577,320	+				-1.4
3,577,320	+				-2.0
3,577,320	+				-0.8
3,577,321	-				-4.1
3,577,321	-				+0.2
3,577,321	-				+1.8
3,577,321	-				-1.4
3,577,321	-				+0.3
3,577,321	-				-1.7
3,577,321	-				+1.6
3,577,321	-				-0.4
3,577,321	-				-1.8
3,577,321	-				-0.4
3,577,321	-				-1.0
3,577,321	-				-1.9
3,577,322	+				-1.7
3,577,322	+				-0.4
3,577,322	+				-1.7
3,577,322	+				+1.6
3,577,322	+				-0.4
3,577,322	+				+1.6
3,577,322	+				-2.0
3,577,322	+				-0.4
3,577,322	+				+0.0
3,577,333	+				-1.4