Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003067

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
3,463,571	-		ABIE53_003066	0.30	+1.1
3,463,645	-		ABIE53_003066	0.37	-0.5
3,463,645	-		ABIE53_003066	0.37	-0.7
3,463,701	+		ABIE53_003066	0.43	-0.8
3,463,701	+		ABIE53_003066	0.43	+0.7
3,463,701	+		ABIE53_003066	0.43	+0.7
3,463,701	+		ABIE53_003066	0.43	-1.3
3,463,701	+		ABIE53_003066	0.43	-1.0
3,463,701	+		ABIE53_003066	0.43	-1.9
3,463,701	+		ABIE53_003066	0.43	-0.9
3,463,701	+		ABIE53_003066	0.43	+1.7
3,463,701	+		ABIE53_003066	0.43	+0.2
3,463,701	+		ABIE53_003066	0.43	-2.3
3,463,701	+		ABIE53_003066	0.43	-0.6
3,463,701	+		ABIE53_003066	0.43	+0.7
3,463,701	+		ABIE53_003066	0.43	+0.2
3,463,701	+		ABIE53_003066	0.43	+0.7
3,463,701	+		ABIE53_003066	0.43	-0.3
3,463,701	+		ABIE53_003066	0.43	+0.7
3,463,702	-		ABIE53_003066	0.43	-0.3
3,463,702	-		ABIE53_003066	0.43	+0.7
3,463,702	-		ABIE53_003066	0.43	+2.2
3,463,702	-		ABIE53_003066	0.43	-1.9
3,463,702	-		ABIE53_003066	0.43	-0.3
3,463,702	-		ABIE53_003066	0.43	+0.7
3,463,702	-		ABIE53_003066	0.43	+0.2
3,463,702	-		ABIE53_003066	0.43	+0.7
3,463,702	-		ABIE53_003066	0.43	+1.5
3,463,702	-		ABIE53_003066	0.43	+1.0
3,463,702	-		ABIE53_003066	0.43	-0.8
3,463,755	+		ABIE53_003066	0.48	-1.3
3,463,755	+		ABIE53_003066	0.48	-1.6
3,463,755	+		ABIE53_003066	0.48	+1.4
3,463,755	+		ABIE53_003066	0.48	+0.7
3,463,755	+		ABIE53_003066	0.48	+0.7
3,463,755	+		ABIE53_003066	0.48	-1.9
3,463,755	+		ABIE53_003066	0.48	-0.9
3,463,755	+		ABIE53_003066	0.48	-1.0
3,463,755	+		ABIE53_003066	0.48	+1.4
3,463,755	+		ABIE53_003066	0.48	+0.7
3,463,756	-		ABIE53_003066	0.48	-0.9
3,463,756	-		ABIE53_003066	0.48	+2.1
3,463,756	-		ABIE53_003066	0.48	+0.1
3,463,756	-		ABIE53_003066	0.48	+0.9
3,463,756	-		ABIE53_003066	0.48	+0.7
3,463,869	+		ABIE53_003066	0.60	+0.7
3,463,869	+		ABIE53_003066	0.60	-1.9
3,463,869	+		ABIE53_003066	0.60	+1.0
3,463,869	+		ABIE53_003066	0.60	+0.7
3,463,870	-		ABIE53_003066	0.60	+0.7
3,463,870	-		ABIE53_003066	0.60	+1.4
3,463,870	-		ABIE53_003066	0.60	-3.1
3,463,870	-		ABIE53_003066	0.60	+0.9
3,463,870	-		ABIE53_003066	0.60	+0.7
3,464,043	+		ABIE53_003066	0.77	-1.3
3,464,044	-		ABIE53_003066	0.77	-2.3
3,464,044	-		ABIE53_003066	0.77	+0.0
3,464,044	-		ABIE53_003066	0.77	-0.3
3,464,056	+		ABIE53_003066	0.79	+1.7
3,464,056	+		ABIE53_003066	0.79	-2.1
3,464,056	+		ABIE53_003066	0.79	+0.7
3,464,057	-		ABIE53_003066	0.79	+0.1
3,464,057	-		ABIE53_003066	0.79	-1.3
3,464,057	-		ABIE53_003066	0.79	-0.1
3,464,205	+				+0.7
3,464,205	+				+0.7
3,464,205	+				-0.3
3,464,205	+				-1.0
3,464,206	-				-0.2
3,464,206	-				-1.1
3,464,206	-				+0.7
3,464,206	-				+2.2
3,464,206	-				+0.7
3,464,206	-				+1.7
3,464,206	-				-1.5
3,464,206	-				-0.9
3,464,281	+				+2.2
3,464,282	-				+1.1
3,465,746	-				+2.7
3,465,746	-				-0.9
3,465,746	-				-0.2
3,465,746	-				+1.2
3,465,752	-				+0.3
3,465,752	-				-2.9
3,465,752	-				+0.7
3,465,752	-				+0.1
3,465,752	-				+1.2
3,465,752	-				-0.3
3,465,752	-				-0.3
3,465,807	-				-2.3
3,465,807	-				-2.2
3,465,823	-				-0.9
3,465,823	-				-1.8
3,465,853	-				+0.7
3,465,875	-				-3.1
3,466,071	-		ABIE53_003068	0.15	+0.7
3,466,071	-		ABIE53_003068	0.15	+1.7
3,466,071	-		ABIE53_003068	0.15	+0.8
3,466,071	-		ABIE53_003068	0.15	+1.2
3,466,071	-		ABIE53_003068	0.15	-0.6
3,466,071	-		ABIE53_003068	0.15	+1.8
3,466,071	-		ABIE53_003068	0.15	+2.0
3,466,071	-		ABIE53_003068	0.15	+0.4
3,466,071	-		ABIE53_003068	0.15	-2.0
3,466,071	-		ABIE53_003068	0.15	+2.5
3,466,071	-		ABIE53_003068	0.15	+0.7
3,466,260	-		ABIE53_003068	0.52	+0.1
3,466,260	-		ABIE53_003068	0.52	+0.2
3,466,260	-		ABIE53_003068	0.52	-0.8
3,466,401	-		ABIE53_003068	0.80	-0.6
3,466,401	-		ABIE53_003068	0.80	+2.0
3,466,504	-				+1.5
3,466,521	-				-0.2
3,466,521	-				+1.4
3,466,572	-				-1.7
3,466,572	-				+0.2
3,466,572	-				+0.4
3,466,572	-				-0.3
3,466,572	-				-0.8
3,466,573	+				+0.2
3,466,573	+				+1.2
3,466,574	-				+0.1
3,466,613	+				-0.7
3,466,613	+				+0.1
3,466,613	+				-2.1
3,466,613	+				-0.9
3,466,613	+				+0.7
3,466,614	-				+1.2
3,466,614	-				+1.7
3,466,614	-				-1.1
3,466,614	-				+0.1
3,466,614	-				+1.7
3,466,614	-				-0.9
3,466,614	-				+3.0
3,466,614	-				+1.7
3,466,614	-				+0.2
3,466,645	-				+1.2
3,466,655	+				+1.8
3,466,655	+				+2.2
3,466,706	+				-1.9
3,466,706	+				+0.1
3,466,707	-				-0.5
3,466,707	-				+0.7
3,466,715	+				-1.3
3,466,715	+				-1.2
3,466,715	+				+0.7
3,466,715	+				-1.5
3,466,715	+				-1.1
3,466,715	+				+0.1
3,466,715	+				-0.6
3,466,716	-				-1.2
3,466,716	-				-1.1
3,466,734	+				-0.3
3,466,734	+				-1.7
3,466,734	+				+0.7
3,466,734	+				-0.9
3,466,734	+				+0.7
3,466,734	+				-0.2
3,466,734	+				+2.2
3,466,734	+				+0.2
3,466,734	+				-3.4
3,466,734	+				+0.3
3,466,734	+				+1.7
3,466,735	-				+0.5
3,466,735	-				+1.7
3,466,735	-				-1.7
3,466,735	-				+0.7
3,466,735	-				-0.2
3,466,735	-				-0.3
3,466,735	-				-0.3
3,466,735	-				+0.7
3,466,735	-				-0.6
3,466,735	-				+2.2
3,466,735	-				+1.9
3,466,735	-				+0.1
3,466,735	-				-0.9