Experiment: Shikimic Acid 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000339 and ABIE53_000340 are separated by 113 nucleotides ABIE53_000340 and ABIE53_000341 are separated by 908 nucleotides
ABIE53_000339: ABIE53_000339 - DNA polymerase-3 subunit beta, at 356,916 to 358,019
_000339
ABIE53_000340: ABIE53_000340 - DNA gyrase subunit B, at 358,133 to 360,604
_000340
ABIE53_000341: ABIE53_000341 - type VI secretion system secreted protein VgrG, at 361,513 to 364,464
_000341
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.017 kb on + strand at 358.072 kb on + strand at 358.072 kb on + strand at 358.072 kb on + strand at 358.072 kb on + strand at 358.110 kb on + strand at 360.652 kb on + strand at 360.652 kb on + strand at 360.652 kb on + strand at 360.652 kb on + strand at 360.653 kb on - strand at 360.653 kb on - strand at 360.653 kb on - strand at 360.653 kb on - strand at 360.676 kb on + strand at 360.676 kb on + strand at 360.676 kb on + strand at 360.676 kb on + strand at 360.676 kb on + strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.677 kb on - strand at 360.679 kb on + strand at 360.680 kb on - strand at 360.704 kb on - strand at 360.737 kb on - strand at 360.783 kb on + strand at 360.794 kb on + strand at 360.794 kb on + strand at 360.795 kb on - strand at 360.795 kb on - strand at 360.795 kb on - strand at 360.845 kb on + strand at 360.845 kb on + strand at 360.845 kb on + strand at 360.846 kb on - strand at 360.846 kb on - strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.979 kb on + strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 360.980 kb on - strand at 361.013 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.070 kb on + strand at 361.071 kb on - strand at 361.071 kb on - strand at 361.071 kb on - strand at 361.071 kb on - strand at 361.071 kb on - strand at 361.071 kb on - strand at 361.077 kb on + strand at 361.077 kb on + strand at 361.077 kb on + strand at 361.078 kb on - strand at 361.078 kb on - strand at 361.078 kb on - strand at 361.078 kb on - strand at 361.078 kb on - strand at 361.117 kb on + strand at 361.118 kb on - strand at 361.146 kb on + strand at 361.146 kb on + strand at 361.146 kb on + strand at 361.146 kb on + strand at 361.147 kb on - strand at 361.147 kb on - strand at 361.147 kb on - strand at 361.147 kb on - strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.206 kb on + strand at 361.207 kb on - strand at 361.207 kb on - strand at 361.318 kb on + strand at 361.346 kb on + strand at 361.347 kb on - strand at 361.439 kb on + strand at 361.439 kb on + strand at 361.439 kb on + strand at 361.455 kb on + strand at 361.465 kb on + strand at 361.512 kb on + strand at 361.513 kb on - strand at 361.554 kb on + strand at 361.554 kb on + strand at 361.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid 5 mM (C) remove 358,017 + +1.1 358,017 + +0.8 358,017 + -0.4 358,017 + +0.7 358,017 + -0.5 358,017 + -0.5 358,017 + +0.0 358,017 + -0.4 358,017 + +0.3 358,072 + -0.1 358,072 + +0.7 358,072 + -1.5 358,072 + -0.5 358,110 + -1.2 360,652 + +2.0 360,652 + -0.7 360,652 + -2.1 360,652 + +0.2 360,653 - -3.5 360,653 - -3.4 360,653 - +0.3 360,653 - -2.3 360,676 + -0.8 360,676 + -2.7 360,676 + -2.0 360,676 + +0.1 360,676 + -0.5 360,677 - +0.5 360,677 - -1.5 360,677 - -1.3 360,677 - +0.4 360,677 - -0.8 360,677 - -1.1 360,677 - -1.5 360,679 + +1.0 360,680 - -4.1 360,704 - -1.0 360,737 - -1.3 360,783 + -1.4 360,794 + -1.9 360,794 + +0.5 360,795 - -1.5 360,795 - -1.5 360,795 - +0.2 360,845 + -3.0 360,845 + +0.5 360,845 + -1.3 360,846 - -0.5 360,846 - +2.0 360,979 + -2.0 360,979 + -0.1 360,979 + -2.4 360,979 + -3.1 360,979 + -2.0 360,979 + -1.1 360,979 + +0.3 360,979 + -0.0 360,979 + -2.1 360,980 - -1.1 360,980 - +0.7 360,980 - -2.3 360,980 - +0.1 360,980 - -1.1 360,980 - -2.9 360,980 - -0.8 360,980 - -3.3 360,980 - -1.5 361,013 + -2.4 361,070 + -0.4 361,070 + -3.2 361,070 + -1.3 361,070 + -2.1 361,070 + +0.5 361,070 + -0.9 361,070 + -3.0 361,071 - +0.5 361,071 - -0.3 361,071 - -3.7 361,071 - -1.1 361,071 - +0.5 361,071 - +1.5 361,077 + -2.1 361,077 + -0.1 361,077 + +0.5 361,078 - +1.5 361,078 - +0.6 361,078 - +1.5 361,078 - +0.5 361,078 - -0.5 361,117 + -1.5 361,118 - -0.5 361,146 + -1.2 361,146 + -1.5 361,146 + +1.5 361,146 + +0.0 361,147 - +0.5 361,147 - +1.2 361,147 - -0.5 361,147 - +1.5 361,206 + -3.2 361,206 + +2.5 361,206 + +1.5 361,206 + +1.5 361,206 + +0.5 361,206 + +0.5 361,206 + -1.5 361,206 + +2.0 361,206 + -0.7 361,207 - +0.5 361,207 - -1.3 361,318 + +0.9 361,346 + -1.8 361,347 - -2.7 361,439 + +1.5 361,439 + -1.9 361,439 + -0.7 361,455 + -0.4 361,465 + +1.5 361,512 + +0.5 361,513 - +0.5 361,554 + -1.5 361,554 + -4.2 361,554 + -4.5
Or see this region's nucleotide sequence