Experiment: Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0098 and DVUA0099 are separated by 169 nucleotides DVUA0099 and DORF807 overlap by 13 nucleotides DORF807 and flrC overlap by 4 nucleotides
DVUA0098: DVUA0098 - dehydrogenase, putative (TIGR), at 132,351 to 133,400
DVUA0098
DVUA0099: DVUA0099 - HAMP domain protein (TIGR), at 133,570 to 135,753
DVUA0099
DORF807: DORF807 - no description, at 135,741 to 136,115
DORF807
DVUA0100: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 136,112 to 137,839
flrC
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 132.605 kb on + strand, within DVUA0098 at 132.605 kb on + strand, within DVUA0098 at 132.728 kb on + strand, within DVUA0098 at 132.751 kb on - strand, within DVUA0098 at 132.775 kb on + strand, within DVUA0098 at 132.783 kb on - strand, within DVUA0098 at 132.796 kb on + strand, within DVUA0098 at 132.799 kb on + strand, within DVUA0098 at 132.898 kb on + strand, within DVUA0098 at 132.908 kb on + strand, within DVUA0098 at 132.916 kb on - strand, within DVUA0098 at 132.941 kb on - strand, within DVUA0098 at 133.073 kb on - strand, within DVUA0098 at 133.104 kb on - strand, within DVUA0098 at 133.104 kb on - strand, within DVUA0098 at 133.193 kb on - strand, within DVUA0098 at 133.198 kb on + strand, within DVUA0098 at 133.198 kb on + strand, within DVUA0098 at 133.252 kb on + strand, within DVUA0098 at 133.252 kb on + strand, within DVUA0098 at 133.284 kb on + strand, within DVUA0098 at 133.395 kb on + strand at 133.395 kb on + strand at 133.410 kb on + strand at 133.474 kb on + strand at 133.474 kb on + strand at 133.482 kb on - strand at 133.664 kb on - strand at 133.666 kb on - strand at 133.711 kb on - strand at 133.800 kb on + strand, within DVUA0099 at 133.806 kb on + strand, within DVUA0099 at 133.822 kb on + strand, within DVUA0099 at 133.829 kb on + strand, within DVUA0099 at 133.876 kb on + strand, within DVUA0099 at 133.975 kb on - strand, within DVUA0099 at 134.053 kb on + strand, within DVUA0099 at 134.093 kb on + strand, within DVUA0099 at 134.098 kb on + strand, within DVUA0099 at 134.215 kb on - strand, within DVUA0099 at 134.414 kb on - strand, within DVUA0099 at 134.416 kb on + strand, within DVUA0099 at 134.494 kb on - strand, within DVUA0099 at 134.550 kb on + strand, within DVUA0099 at 134.666 kb on + strand, within DVUA0099 at 134.674 kb on - strand, within DVUA0099 at 134.701 kb on - strand, within DVUA0099 at 134.732 kb on + strand, within DVUA0099 at 134.740 kb on - strand, within DVUA0099 at 134.812 kb on + strand, within DVUA0099 at 134.820 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 135.024 kb on - strand, within DVUA0099 at 135.051 kb on + strand, within DVUA0099 at 135.229 kb on + strand, within DVUA0099 at 135.341 kb on + strand, within DVUA0099 at 135.344 kb on - strand, within DVUA0099 at 135.351 kb on + strand, within DVUA0099 at 135.356 kb on + strand, within DVUA0099 at 135.500 kb on - strand, within DVUA0099 at 135.561 kb on + strand at 135.569 kb on - strand at 135.635 kb on + strand at 135.643 kb on - strand at 135.734 kb on + strand at 135.762 kb on - strand at 135.849 kb on - strand, within DORF807 at 135.924 kb on + strand, within DORF807 at 135.932 kb on - strand, within DORF807 at 135.998 kb on - strand, within DORF807 at 136.048 kb on - strand, within DORF807 at 136.064 kb on - strand, within DORF807 at 136.066 kb on + strand, within DORF807 at 136.092 kb on - strand at 136.092 kb on - strand at 136.110 kb on + strand at 136.368 kb on + strand, within flrC at 136.416 kb on + strand, within flrC at 136.437 kb on + strand, within flrC at 136.478 kb on - strand, within flrC at 136.540 kb on - strand, within flrC at 136.557 kb on + strand, within flrC at 136.633 kb on + strand, within flrC at 136.638 kb on - strand, within flrC at 136.638 kb on - strand, within flrC at 136.652 kb on - strand, within flrC at 136.674 kb on + strand, within flrC
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source + 0.1% Yeast Extract remove 132,605 + DVUA0098 0.24 -2.1 132,605 + DVUA0098 0.24 +0.2 132,728 + DVUA0098 0.36 +0.3 132,751 - DVUA0098 0.38 +0.1 132,775 + DVUA0098 0.40 -0.1 132,783 - DVUA0098 0.41 -1.1 132,796 + DVUA0098 0.42 +0.0 132,799 + DVUA0098 0.43 +0.0 132,898 + DVUA0098 0.52 +0.9 132,908 + DVUA0098 0.53 +0.3 132,916 - DVUA0098 0.54 -0.4 132,941 - DVUA0098 0.56 -0.1 133,073 - DVUA0098 0.69 +0.2 133,104 - DVUA0098 0.72 -1.1 133,104 - DVUA0098 0.72 -2.8 133,193 - DVUA0098 0.80 -0.7 133,198 + DVUA0098 0.81 +0.3 133,198 + DVUA0098 0.81 +0.5 133,252 + DVUA0098 0.86 -1.5 133,252 + DVUA0098 0.86 +0.4 133,284 + DVUA0098 0.89 -0.4 133,395 + +0.1 133,395 + -0.8 133,410 + -0.4 133,474 + -0.4 133,474 + +0.4 133,482 - +0.9 133,664 - -0.1 133,666 - -0.1 133,711 - +0.3 133,800 + DVUA0099 0.11 +0.1 133,806 + DVUA0099 0.11 -1.7 133,822 + DVUA0099 0.12 -0.8 133,829 + DVUA0099 0.12 -1.5 133,876 + DVUA0099 0.14 -0.1 133,975 - DVUA0099 0.19 -1.2 134,053 + DVUA0099 0.22 -0.4 134,093 + DVUA0099 0.24 +1.7 134,098 + DVUA0099 0.24 +0.4 134,215 - DVUA0099 0.30 -0.1 134,414 - DVUA0099 0.39 -3.0 134,416 + DVUA0099 0.39 +0.1 134,494 - DVUA0099 0.42 -1.1 134,550 + DVUA0099 0.45 -1.0 134,666 + DVUA0099 0.50 -0.1 134,674 - DVUA0099 0.51 -1.2 134,701 - DVUA0099 0.52 +0.9 134,732 + DVUA0099 0.53 -0.4 134,740 - DVUA0099 0.54 -0.2 134,812 + DVUA0099 0.57 -0.1 134,820 - DVUA0099 0.57 -0.8 134,873 - DVUA0099 0.60 +0.3 134,873 - DVUA0099 0.60 -2.6 135,024 - DVUA0099 0.67 -2.4 135,051 + DVUA0099 0.68 -1.5 135,229 + DVUA0099 0.76 +0.7 135,341 + DVUA0099 0.81 -1.8 135,344 - DVUA0099 0.81 +0.6 135,351 + DVUA0099 0.82 +0.4 135,356 + DVUA0099 0.82 -1.0 135,500 - DVUA0099 0.88 -0.3 135,561 + +0.1 135,569 - +0.0 135,635 + -0.3 135,643 - -0.5 135,734 + +0.0 135,762 - +0.1 135,849 - DORF807 0.29 +1.3 135,924 + DORF807 0.49 -1.7 135,932 - DORF807 0.51 +0.0 135,998 - DORF807 0.69 -1.4 136,048 - DORF807 0.82 +1.0 136,064 - DORF807 0.86 -0.1 136,066 + DORF807 0.87 +0.7 136,092 - +0.6 136,092 - -0.1 136,110 + -0.0 136,368 + flrC DVUA0100 0.15 -0.3 136,416 + flrC DVUA0100 0.18 -0.8 136,437 + flrC DVUA0100 0.19 +0.4 136,478 - flrC DVUA0100 0.21 -0.7 136,540 - flrC DVUA0100 0.25 +0.1 136,557 + flrC DVUA0100 0.26 -0.3 136,633 + flrC DVUA0100 0.30 +0.3 136,638 - flrC DVUA0100 0.30 +0.1 136,638 - flrC DVUA0100 0.30 +0.3 136,652 - flrC DVUA0100 0.31 -0.1 136,674 + flrC DVUA0100 0.33 -2.5
Or see this region's nucleotide sequence