Strain Fitness in Sinorhizobium meliloti 1021 around SMc00980

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00981 and SMc00980 are separated by 1 nucleotidesSMc00980 and SMc00979 are separated by 295 nucleotides SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418 SMc00981 SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445 SMc00980 SMc00979: SMc00979 - hypothetical protein, at 958,741 to 959,154 SMc00979 Position (kb) 957 958 959Strain fitness (log2 ratio) -2 -1 0 1 2at 956.534 kb on + strand, within SMc00981at 956.534 kb on + strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.535 kb on - strand, within SMc00981at 956.536 kb on + strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.537 kb on - strand, within SMc00981at 956.705 kb on + strand, within SMc00981at 957.068 kb on + strand, within SMc00981at 957.365 kb on + strandat 957.365 kb on + strandat 957.534 kb on + strand, within SMc00980at 957.705 kb on + strand, within SMc00980at 957.706 kb on - strand, within SMc00980at 957.706 kb on - strand, within SMc00980at 957.819 kb on - strand, within SMc00980at 957.844 kb on + strand, within SMc00980at 957.845 kb on - strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.923 kb on - strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.995 kb on - strand, within SMc00980at 958.057 kb on + strand, within SMc00980at 958.112 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.218 kb on - strand, within SMc00980at 958.238 kb on + strand, within SMc00980at 958.239 kb on - strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.340 kb on - strand, within SMc00980at 958.455 kb on + strandat 958.455 kb on + strandat 958.456 kb on - strandat 958.507 kb on - strandat 958.507 kb on - strandat 958.517 kb on - strandat 958.517 kb on - strandat 958.562 kb on - strandat 958.678 kb on - strandat 958.886 kb on - strand, within SMc00979at 958.888 kb on + strand, within SMc00979at 958.906 kb on + strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.913 kb on - strand, within SMc00979at 958.957 kb on + strand, within SMc00979at 958.961 kb on - strand, within SMc00979at 958.975 kb on + strand, within SMc00979at 959.000 kb on + strand, within SMc00979at 959.065 kb on + strand, within SMc00979at 959.074 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.105 kb on - strand, within SMc00979at 959.114 kb on - strandat 959.114 kb on - strandat 959.116 kb on - strandat 959.149 kb on - strandat 959.164 kb on + strandat 959.165 kb on - strandat 959.166 kb on + strandat 959.166 kb on + strandat 959.167 kb on - strandat 959.356 kb on + strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.371 kb on + strandat 959.400 kb on + strandat 959.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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956,534 + SMc00981 0.19 +0.1
956,534 + SMc00981 0.19 -2.1
956,535 - SMc00981 0.19 -0.7
956,535 - SMc00981 0.19 -1.5
956,535 - SMc00981 0.19 -0.8
956,536 + SMc00981 0.19 +0.4
956,537 - SMc00981 0.19 -2.2
956,537 - SMc00981 0.19 -1.0
956,537 - SMc00981 0.19 +0.8
956,705 + SMc00981 0.35 -0.5
957,068 + SMc00981 0.68 -0.8
957,365 + +2.4
957,365 + -1.8
957,534 + SMc00980 0.11 -0.4
957,705 + SMc00980 0.28 +0.7
957,706 - SMc00980 0.28 +0.8
957,706 - SMc00980 0.28 +0.1
957,819 - SMc00980 0.39 +0.2
957,844 + SMc00980 0.41 +0.3
957,845 - SMc00980 0.41 +0.9
957,922 + SMc00980 0.49 -0.1
957,922 + SMc00980 0.49 +0.6
957,923 - SMc00980 0.49 +1.4
957,994 + SMc00980 0.56 -0.3
957,994 + SMc00980 0.56 -0.6
957,995 - SMc00980 0.56 +0.3
958,057 + SMc00980 0.62 +1.1
958,112 - SMc00980 0.67 +0.1
958,163 - SMc00980 0.72 -0.1
958,163 - SMc00980 0.72 +0.1
958,163 - SMc00980 0.72 +0.0
958,218 - SMc00980 0.78 -0.2
958,238 + SMc00980 0.80 -0.9
958,239 - SMc00980 0.80 +0.4
958,339 + SMc00980 0.90 -1.6
958,339 + SMc00980 0.90 +1.1
958,339 + SMc00980 0.90 +0.4
958,340 - SMc00980 0.90 -0.9
958,455 + +2.7
958,455 + -0.4
958,456 - +0.0
958,507 - -1.3
958,507 - +1.2
958,517 - -0.4
958,517 - +0.0
958,562 - -0.0
958,678 - +0.2
958,886 - SMc00979 0.35 +1.2
958,888 + SMc00979 0.36 -0.3
958,906 + SMc00979 0.40 +0.0
958,907 - SMc00979 0.40 -1.0
958,907 - SMc00979 0.40 -0.9
958,913 - SMc00979 0.42 +1.9
958,957 + SMc00979 0.52 +1.6
958,961 - SMc00979 0.53 +0.2
958,975 + SMc00979 0.57 -0.5
959,000 + SMc00979 0.63 +0.4
959,065 + SMc00979 0.78 +1.3
959,074 + SMc00979 0.80 -0.4
959,104 + SMc00979 0.88 -1.6
959,104 + SMc00979 0.88 -1.4
959,104 + SMc00979 0.88 -0.1
959,104 + SMc00979 0.88 -0.3
959,104 + SMc00979 0.88 +1.4
959,105 - SMc00979 0.88 +0.0
959,114 - -0.0
959,114 - +0.2
959,116 - +0.7
959,149 - -1.4
959,164 + +1.1
959,165 - +0.4
959,166 + -0.1
959,166 + +0.2
959,167 - +0.2
959,356 + -0.2
959,356 + -0.3
959,357 - +0.1
959,357 - -0.1
959,357 - -0.2
959,371 + +0.5
959,400 + +0.4
959,401 - -0.3

Or see this region's nucleotide sequence