Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16880

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse16; day3
1,558,370	+		BBR_RS16875	0.17	-2.5
1,558,378	-		BBR_RS16875	0.17	-2.0
1,558,423	-		BBR_RS16875	0.22	-0.1
1,558,423	-		BBR_RS16875	0.22	+2.9
1,558,448	+		BBR_RS16875	0.25	-1.1
1,558,478	+		BBR_RS16875	0.28	-2.2
1,558,478	+		BBR_RS16875	0.28	+0.2
1,558,539	+		BBR_RS16875	0.35	+1.0
1,558,539	+		BBR_RS16875	0.35	-2.7
1,558,539	+		BBR_RS16875	0.35	+1.5
1,558,583	+		BBR_RS16875	0.40	-1.3
1,558,583	+		BBR_RS16875	0.40	-0.2
1,558,591	-		BBR_RS16875	0.41	+1.6
1,558,593	-		BBR_RS16875	0.41	+0.7
1,558,593	-		BBR_RS16875	0.41	-0.3
1,558,593	-		BBR_RS16875	0.41	+0.1
1,558,629	+		BBR_RS16875	0.45	+1.4
1,558,657	+		BBR_RS16875	0.48	+0.2
1,558,660	-		BBR_RS16875	0.48	-1.4
1,558,669	-		BBR_RS16875	0.49	-0.2
1,558,672	-		BBR_RS16875	0.50	+1.5
1,558,676	+		BBR_RS16875	0.50	-1.8
1,558,689	-		BBR_RS16875	0.51	+0.1
1,558,693	+		BBR_RS16875	0.52	-1.7
1,558,693	+		BBR_RS16875	0.52	+0.2
1,558,702	-		BBR_RS16875	0.53	+0.4
1,558,757	+		BBR_RS16875	0.59	+2.6
1,558,762	-		BBR_RS16875	0.59	-1.0
1,558,764	+		BBR_RS16875	0.60	-1.6
1,558,775	-		BBR_RS16875	0.61	+0.2
1,558,777	-		BBR_RS16875	0.61	-0.5
1,558,836	+		BBR_RS16875	0.67	+2.5
1,558,901	+		BBR_RS16875	0.75	-0.2
1,558,944	+		BBR_RS16875	0.79	-3.4
1,558,995	-		BBR_RS16875	0.85	-2.5
1,559,035	+		BBR_RS16875	0.89	-0.4
1,559,043	-				-3.0
1,559,043	-				+0.9
1,559,043	-				+0.5
1,559,054	+				-0.2
1,559,137	-				+0.2
1,559,477	-				-0.6
1,559,503	+		BBR_RS16880	0.12	-2.1
1,559,513	+		BBR_RS16880	0.13	-3.0
1,559,668	-		BBR_RS16880	0.25	-0.3
1,559,682	+		BBR_RS16880	0.27	-2.8
1,559,707	+		BBR_RS16880	0.29	-1.5
1,559,715	-		BBR_RS16880	0.29	+0.4
1,559,732	+		BBR_RS16880	0.31	+1.5
1,559,732	+		BBR_RS16880	0.31	+0.7
1,559,813	+		BBR_RS16880	0.37	-0.5
1,559,813	+		BBR_RS16880	0.37	-0.5
1,559,813	+		BBR_RS16880	0.37	-2.2
1,559,813	+		BBR_RS16880	0.37	-1.8
1,559,813	+		BBR_RS16880	0.37	-0.9
1,559,821	-		BBR_RS16880	0.38	-1.3
1,559,821	-		BBR_RS16880	0.38	-0.5
1,559,821	-		BBR_RS16880	0.38	-1.5
1,559,821	-		BBR_RS16880	0.38	-0.1
1,559,821	-		BBR_RS16880	0.38	-4.3
1,559,821	-		BBR_RS16880	0.38	-1.1
1,559,823	+		BBR_RS16880	0.38	+1.5
1,559,830	-		BBR_RS16880	0.39	-0.2
1,559,841	-		BBR_RS16880	0.40	-2.1
1,559,842	+		BBR_RS16880	0.40	-2.3
1,559,953	+		BBR_RS16880	0.49	-1.9
1,559,958	+		BBR_RS16880	0.49	-0.2
1,559,977	+		BBR_RS16880	0.51	-0.1
1,559,988	+		BBR_RS16880	0.52	-1.3
1,559,998	+		BBR_RS16880	0.53	-1.7
1,560,028	-		BBR_RS16880	0.55	-1.1
1,560,158	+		BBR_RS16880	0.66	-2.3
1,560,161	-		BBR_RS16880	0.66	+0.0
1,560,182	+		BBR_RS16880	0.68	+1.8
1,560,213	-		BBR_RS16880	0.70	-0.6
1,560,215	+		BBR_RS16880	0.70	-3.1
1,560,223	-		BBR_RS16880	0.71	-2.0
1,560,223	-		BBR_RS16880	0.71	+1.1
1,560,223	-		BBR_RS16880	0.71	-2.2
1,560,228	-		BBR_RS16880	0.72	-1.9
1,560,228	-		BBR_RS16880	0.72	+0.7
1,560,239	-		BBR_RS16880	0.72	-1.9
1,560,240	+		BBR_RS16880	0.73	+0.6
1,560,283	+		BBR_RS16880	0.76	-0.8
1,560,287	+		BBR_RS16880	0.76	-2.7
1,560,288	+		BBR_RS16880	0.76	+0.6
1,560,347	-		BBR_RS16880	0.81	-1.9
1,560,383	+		BBR_RS16880	0.84	-1.1
1,560,421	-		BBR_RS16880	0.87	-1.1
1,560,467	+				+0.4
1,560,483	-				-2.7
1,560,487	-				-1.8
1,560,554	-				-2.4
1,560,640	+				+0.5
1,560,644	+				-1.7
1,560,647	-				-0.5
1,560,657	-				-3.1
1,560,658	+				+0.2
1,560,673	-				-1.6
1,560,678	+				-3.6
1,560,686	-				-0.5
1,560,757	+		BBR_RS16885	0.13	-1.1
1,560,757	+		BBR_RS16885	0.13	-2.9
1,560,765	-		BBR_RS16885	0.14	-1.6
1,560,780	+		BBR_RS16885	0.15	-3.1
1,560,834	+		BBR_RS16885	0.21	-1.0
1,560,834	+		BBR_RS16885	0.21	-1.9
1,560,842	+		BBR_RS16885	0.22	-0.5
1,560,842	+		BBR_RS16885	0.22	+0.5
1,560,842	+		BBR_RS16885	0.22	-2.4
1,560,875	-		BBR_RS16885	0.26	-1.6
1,560,917	-		BBR_RS16885	0.31	-1.9
1,560,953	+		BBR_RS16885	0.35	-0.2
1,560,981	+		BBR_RS16885	0.38	-3.4
1,560,994	+		BBR_RS16885	0.39	+0.7
1,561,019	+		BBR_RS16885	0.42	+0.6
1,561,019	+		BBR_RS16885	0.42	+0.5
1,561,027	-		BBR_RS16885	0.43	-0.9
1,561,040	+		BBR_RS16885	0.44	-2.6
1,561,040	+		BBR_RS16885	0.44	-1.7
1,561,059	-		BBR_RS16885	0.46	-1.0
1,561,107	+		BBR_RS16885	0.52	-3.2
1,561,137	+		BBR_RS16885	0.55	-2.6
1,561,137	+		BBR_RS16885	0.55	-1.4
1,561,137	+		BBR_RS16885	0.55	-2.7
1,561,137	+		BBR_RS16885	0.55	-0.7
1,561,145	-		BBR_RS16885	0.56	-1.8
1,561,176	+		BBR_RS16885	0.59	-3.6
1,561,213	+		BBR_RS16885	0.64	-2.5
1,561,222	-		BBR_RS16885	0.65	-1.6
1,561,241	+		BBR_RS16885	0.67	-1.9
1,561,249	-		BBR_RS16885	0.68	-2.3
1,561,273	-		BBR_RS16885	0.70	-2.4
1,561,353	+		BBR_RS16885	0.79	-2.9
1,561,353	+		BBR_RS16885	0.79	-3.4
1,561,353	+		BBR_RS16885	0.79	-2.7
1,561,353	+		BBR_RS16885	0.79	+0.9
1,561,353	+		BBR_RS16885	0.79	-1.0
1,561,361	-		BBR_RS16885	0.80	-1.3
1,561,361	-		BBR_RS16885	0.80	-1.1
1,561,361	-		BBR_RS16885	0.80	-2.2
1,561,378	+		BBR_RS16885	0.82	-3.1
1,561,399	+		BBR_RS16885	0.84	-1.6
1,561,399	-		BBR_RS16885	0.84	-0.8
1,561,444	+		BBR_RS16885	0.89	-0.0
1,561,444	+		BBR_RS16885	0.89	-1.7
1,561,542	-				-0.9
1,561,553	-				-1.6
1,561,561	-				+0.4
1,561,565	-				-0.6