Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13795

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13790 and BBR_RS13795 are separated by 8 nucleotidesBBR_RS13795 and BBR_RS13800 are separated by 82 nucleotidesBBR_RS13800 and BBR_RS13805 are separated by 132 nucleotides BBR_RS13790: BBR_RS13790 - pyridoxal phosphate-dependent aminotransferase, at 866,853 to 868,064 _RS13790 BBR_RS13795: BBR_RS13795 - ABC transporter ATP-binding protein, at 868,073 to 868,858 _RS13795 BBR_RS13800: BBR_RS13800 - hypothetical protein, at 868,941 to 869,120 _RS13800 BBR_RS13805: BBR_RS13805 - hypothetical protein, at 869,253 to 871,502 _RS13805 Position (kb) 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 867.078 kb on - strand, within BBR_RS13790at 867.111 kb on + strand, within BBR_RS13790at 867.122 kb on - strand, within BBR_RS13790at 867.143 kb on - strand, within BBR_RS13790at 867.155 kb on - strand, within BBR_RS13790at 867.180 kb on - strand, within BBR_RS13790at 867.191 kb on + strand, within BBR_RS13790at 867.197 kb on - strand, within BBR_RS13790at 867.221 kb on - strand, within BBR_RS13790at 867.244 kb on - strand, within BBR_RS13790at 867.260 kb on + strand, within BBR_RS13790at 867.277 kb on + strand, within BBR_RS13790at 867.304 kb on + strand, within BBR_RS13790at 867.369 kb on + strand, within BBR_RS13790at 867.471 kb on - strand, within BBR_RS13790at 867.613 kb on + strand, within BBR_RS13790at 867.709 kb on - strand, within BBR_RS13790at 867.726 kb on + strand, within BBR_RS13790at 867.726 kb on + strand, within BBR_RS13790at 867.734 kb on + strand, within BBR_RS13790at 867.736 kb on - strand, within BBR_RS13790at 867.736 kb on - strand, within BBR_RS13790at 867.744 kb on + strand, within BBR_RS13790at 867.811 kb on - strand, within BBR_RS13790at 867.836 kb on + strand, within BBR_RS13790at 867.886 kb on - strand, within BBR_RS13790at 867.906 kb on - strand, within BBR_RS13790at 867.931 kb on + strand, within BBR_RS13790at 867.939 kb on - strand, within BBR_RS13790at 867.939 kb on - strand, within BBR_RS13790at 867.949 kb on - strandat 868.022 kb on + strandat 868.032 kb on + strandat 868.040 kb on - strandat 868.042 kb on + strandat 868.066 kb on - strandat 868.113 kb on - strandat 868.211 kb on + strand, within BBR_RS13795at 868.211 kb on + strand, within BBR_RS13795at 868.271 kb on + strand, within BBR_RS13795at 868.292 kb on + strand, within BBR_RS13795at 868.316 kb on + strand, within BBR_RS13795at 868.324 kb on - strand, within BBR_RS13795at 868.326 kb on - strand, within BBR_RS13795at 868.398 kb on + strand, within BBR_RS13795at 868.457 kb on + strand, within BBR_RS13795at 868.495 kb on - strand, within BBR_RS13795at 868.512 kb on - strand, within BBR_RS13795at 868.573 kb on - strand, within BBR_RS13795at 868.590 kb on + strand, within BBR_RS13795at 868.624 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.630 kb on + strand, within BBR_RS13795at 868.632 kb on - strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.642 kb on + strand, within BBR_RS13795at 868.675 kb on - strand, within BBR_RS13795at 868.745 kb on - strand, within BBR_RS13795at 868.795 kb on + strandat 868.803 kb on - strandat 868.836 kb on + strandat 868.852 kb on - strandat 868.863 kb on - strandat 868.867 kb on + strandat 868.890 kb on + strandat 868.891 kb on + strandat 868.904 kb on + strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.912 kb on - strandat 868.924 kb on + strandat 868.930 kb on + strandat 868.948 kb on + strandat 868.948 kb on + strandat 869.011 kb on - strand, within BBR_RS13800at 869.050 kb on + strand, within BBR_RS13800at 869.054 kb on + strand, within BBR_RS13800at 869.063 kb on - strand, within BBR_RS13800at 869.067 kb on + strand, within BBR_RS13800at 869.075 kb on - strand, within BBR_RS13800at 869.093 kb on + strand, within BBR_RS13800at 869.118 kb on - strandat 869.126 kb on + strandat 869.128 kb on + strandat 869.138 kb on - strandat 869.138 kb on - strandat 869.175 kb on - strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.251 kb on + strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.259 kb on - strandat 869.268 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strandat 869.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day3
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867,078 - BBR_RS13790 0.19 +0.2
867,111 + BBR_RS13790 0.21 +1.5
867,122 - BBR_RS13790 0.22 +2.1
867,143 - BBR_RS13790 0.24 +0.6
867,155 - BBR_RS13790 0.25 +1.3
867,180 - BBR_RS13790 0.27 +0.4
867,191 + BBR_RS13790 0.28 +0.9
867,197 - BBR_RS13790 0.28 -1.1
867,221 - BBR_RS13790 0.30 +0.5
867,244 - BBR_RS13790 0.32 -1.4
867,260 + BBR_RS13790 0.34 +0.3
867,277 + BBR_RS13790 0.35 -1.9
867,304 + BBR_RS13790 0.37 +1.0
867,369 + BBR_RS13790 0.43 -1.9
867,471 - BBR_RS13790 0.51 -1.4
867,613 + BBR_RS13790 0.63 +0.4
867,709 - BBR_RS13790 0.71 +0.3
867,726 + BBR_RS13790 0.72 -2.1
867,726 + BBR_RS13790 0.72 -0.6
867,734 + BBR_RS13790 0.73 -1.4
867,736 - BBR_RS13790 0.73 +0.7
867,736 - BBR_RS13790 0.73 -1.1
867,744 + BBR_RS13790 0.74 -1.9
867,811 - BBR_RS13790 0.79 +2.3
867,836 + BBR_RS13790 0.81 -0.9
867,886 - BBR_RS13790 0.85 +1.7
867,906 - BBR_RS13790 0.87 -0.1
867,931 + BBR_RS13790 0.89 +0.6
867,939 - BBR_RS13790 0.90 +2.9
867,939 - BBR_RS13790 0.90 +0.2
867,949 - -0.7
868,022 + +1.0
868,032 + -1.9
868,040 - -1.4
868,042 + +1.5
868,066 - +1.0
868,113 - +0.3
868,211 + BBR_RS13795 0.18 -0.8
868,211 + BBR_RS13795 0.18 +1.9
868,271 + BBR_RS13795 0.25 -1.7
868,292 + BBR_RS13795 0.28 -1.9
868,316 + BBR_RS13795 0.31 -1.7
868,324 - BBR_RS13795 0.32 -1.9
868,326 - BBR_RS13795 0.32 -1.7
868,398 + BBR_RS13795 0.41 +1.3
868,457 + BBR_RS13795 0.49 -2.4
868,495 - BBR_RS13795 0.54 +0.1
868,512 - BBR_RS13795 0.56 -1.2
868,573 - BBR_RS13795 0.64 -1.8
868,590 + BBR_RS13795 0.66 +0.0
868,624 + BBR_RS13795 0.70 -2.2
868,630 + BBR_RS13795 0.71 -3.2
868,630 + BBR_RS13795 0.71 -3.3
868,632 - BBR_RS13795 0.71 -2.4
868,642 + BBR_RS13795 0.72 +0.9
868,642 + BBR_RS13795 0.72 +0.2
868,675 - BBR_RS13795 0.77 +2.5
868,745 - BBR_RS13795 0.85 -3.5
868,795 + -0.3
868,803 - -2.0
868,836 + +0.9
868,852 - -1.6
868,863 - -2.8
868,867 + +2.4
868,890 + -1.4
868,891 + +1.8
868,904 + +2.0
868,912 - -2.8
868,912 - -1.3
868,912 - +0.4
868,924 + -2.1
868,930 + -0.2
868,948 + +3.4
868,948 + -0.3
869,011 - BBR_RS13800 0.39 -0.8
869,050 + BBR_RS13800 0.61 -2.3
869,054 + BBR_RS13800 0.63 -2.8
869,063 - BBR_RS13800 0.68 -0.4
869,067 + BBR_RS13800 0.70 +0.8
869,075 - BBR_RS13800 0.74 -1.6
869,093 + BBR_RS13800 0.84 -1.0
869,118 - +0.5
869,126 + +0.1
869,128 + +0.7
869,138 - -2.5
869,138 - -1.3
869,175 - -0.3
869,251 + +0.2
869,251 + +1.8
869,251 + +0.9
869,251 + -1.7
869,251 + +2.8
869,259 - +2.2
869,259 - -1.3
869,259 - -0.3
869,268 - +1.4
869,269 - +0.2
869,269 - -0.2
869,269 - -1.7

Or see this region's nucleotide sequence