Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11185 and BBR_RS11190 are separated by 318 nucleotides BBR_RS11190 and BBR_RS11195 overlap by 4 nucleotides
BBR_RS11185: BBR_RS11185 - type I DNA topoisomerase, at 252,676 to 255,726
_RS11185
BBR_RS11190: BBR_RS11190 - dTMP kinase, at 256,045 to 256,665
_RS11190
BBR_RS11195: BBR_RS11195 - DNA polymerase III subunit delta', at 256,662 to 257,813
_RS11195
Position (kb) 256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 255.225 kb on + strand, within BBR_RS11185 at 255.233 kb on - strand, within BBR_RS11185 at 255.265 kb on - strand, within BBR_RS11185 at 255.306 kb on + strand, within BBR_RS11185 at 255.371 kb on + strand, within BBR_RS11185 at 255.455 kb on + strand at 255.495 kb on + strand at 255.495 kb on + strand at 255.503 kb on - strand at 255.511 kb on + strand at 255.537 kb on + strand at 255.540 kb on - strand at 255.572 kb on + strand at 255.572 kb on + strand at 255.605 kb on + strand at 255.605 kb on + strand at 255.605 kb on + strand at 255.613 kb on - strand at 255.613 kb on - strand at 255.615 kb on + strand at 255.638 kb on - strand at 255.640 kb on + strand at 255.661 kb on + strand at 255.671 kb on + strand at 255.697 kb on - strand at 255.704 kb on - strand at 255.794 kb on + strand at 255.799 kb on + strand at 255.799 kb on + strand at 255.810 kb on + strand at 255.812 kb on + strand at 255.823 kb on + strand at 255.823 kb on + strand at 255.831 kb on - strand at 255.832 kb on - strand at 255.838 kb on + strand at 255.865 kb on - strand at 255.867 kb on + strand at 255.867 kb on + strand at 255.875 kb on - strand at 255.899 kb on + strand at 255.899 kb on + strand at 255.918 kb on + strand at 255.923 kb on + strand at 255.926 kb on - strand at 255.926 kb on - strand at 255.982 kb on + strand at 255.991 kb on - strand at 256.011 kb on + strand at 256.011 kb on + strand at 256.017 kb on - strand at 256.028 kb on + strand at 256.029 kb on + strand at 256.037 kb on - strand at 256.659 kb on + strand at 256.673 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day3 remove 255,225 + BBR_RS11185 0.84 +0.2 255,233 - BBR_RS11185 0.84 -2.5 255,265 - BBR_RS11185 0.85 +1.3 255,306 + BBR_RS11185 0.86 -1.3 255,371 + BBR_RS11185 0.88 +0.4 255,455 + -0.2 255,495 + +0.3 255,495 + -0.4 255,503 - -0.3 255,511 + -0.0 255,537 + +1.4 255,540 - +0.8 255,572 + +3.2 255,572 + +1.0 255,605 + +0.8 255,605 + +1.3 255,605 + +2.6 255,613 - +0.8 255,613 - +3.4 255,615 + -1.7 255,638 - +2.2 255,640 + +0.4 255,661 + +2.2 255,671 + +3.0 255,697 - +0.6 255,704 - +0.9 255,794 + +2.0 255,799 + +0.1 255,799 + +0.3 255,810 + +2.1 255,812 + +0.8 255,823 + +2.1 255,823 + -2.3 255,831 - -1.8 255,832 - +0.6 255,838 + -1.2 255,865 - +1.0 255,867 + -2.4 255,867 + +1.0 255,875 - +2.3 255,899 + -0.2 255,899 + +0.2 255,918 + -2.4 255,923 + +1.4 255,926 - -1.2 255,926 - -2.0 255,982 + +3.1 255,991 - +0.4 256,011 + -3.1 256,011 + +1.2 256,017 - -0.8 256,028 + -0.9 256,029 + +2.1 256,037 - +1.6 256,659 + -1.3 256,673 + -2.9
Or see this region's nucleotide sequence