Experiment: Pyruvate (fermenting) with Na2S as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0355 and tag are separated by 120 nucleotides tag and DVU0357 are separated by 11 nucleotides DVU0357 and tRNA-Thr are separated by 75 nucleotides tRNA-Thr and DVU0358 are separated by 214 nucleotides
DVU0355: DVU0355 - sensory box/GGDEF domain protein (TIGR), at 403,528 to 405,351
DVU0355
DVU0356: tag - DNA-3-methyladenine glycosylase I (TIGR), at 405,472 to 406,047
tag
DVU0357: DVU0357 - conserved hypothetical protein (TIGR), at 406,059 to 406,976
DVU0357
DVU_tRNA-Thr-1: tRNA-Thr - tRNA with anticodon GGT for Thr (VIMSS-AUTO), at 407,052 to 407,127
tRNA-Thr
DVU0358: DVU0358 - hypothetical protein (TIGR), at 407,342 to 408,085
DVU0358
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.087 kb on - strand, within DVU0355 at 405.087 kb on - strand, within DVU0355 at 405.134 kb on + strand, within DVU0355 at 405.161 kb on + strand, within DVU0355 at 405.174 kb on - strand at 405.174 kb on - strand at 405.191 kb on + strand at 405.203 kb on + strand at 405.226 kb on + strand at 405.297 kb on + strand at 405.307 kb on - strand at 405.342 kb on - strand at 405.379 kb on + strand at 405.399 kb on + strand at 405.468 kb on + strand at 405.469 kb on + strand at 405.476 kb on - strand at 405.491 kb on - strand at 405.514 kb on - strand at 405.530 kb on + strand, within tag at 405.640 kb on + strand, within tag at 405.676 kb on + strand, within tag at 405.676 kb on + strand, within tag at 405.681 kb on + strand, within tag at 405.711 kb on + strand, within tag at 405.719 kb on - strand, within tag at 405.757 kb on - strand, within tag at 405.765 kb on + strand, within tag at 405.765 kb on + strand, within tag at 405.817 kb on + strand, within tag at 405.902 kb on + strand, within tag at 405.935 kb on - strand, within tag at 405.944 kb on - strand, within tag at 405.991 kb on + strand at 405.998 kb on + strand at 406.003 kb on + strand at 406.179 kb on - strand, within DVU0357 at 406.181 kb on + strand, within DVU0357 at 406.188 kb on - strand, within DVU0357 at 406.189 kb on - strand, within DVU0357 at 406.189 kb on - strand, within DVU0357 at 406.212 kb on + strand, within DVU0357 at 406.326 kb on - strand, within DVU0357 at 406.332 kb on + strand, within DVU0357 at 406.350 kb on - strand, within DVU0357 at 406.367 kb on + strand, within DVU0357 at 406.431 kb on + strand, within DVU0357 at 406.432 kb on - strand, within DVU0357 at 406.441 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.561 kb on + strand, within DVU0357 at 406.562 kb on + strand, within DVU0357 at 406.569 kb on - strand, within DVU0357 at 406.577 kb on - strand, within DVU0357 at 406.691 kb on - strand, within DVU0357 at 406.742 kb on + strand, within DVU0357 at 406.794 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.799 kb on + strand, within DVU0357 at 406.805 kb on - strand, within DVU0357 at 406.823 kb on + strand, within DVU0357 at 406.876 kb on + strand, within DVU0357 at 406.973 kb on + strand at 407.088 kb on - strand, within tRNA-Thr at 407.101 kb on + strand, within tRNA-Thr at 407.124 kb on - strand at 407.221 kb on + strand at 407.319 kb on + strand at 407.502 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.595 kb on - strand, within DVU0358 at 407.711 kb on - strand, within DVU0358 at 407.758 kb on - strand, within DVU0358 at 407.881 kb on + strand, within DVU0358 at 407.889 kb on - strand, within DVU0358 at 407.923 kb on - strand, within DVU0358 at 407.928 kb on - strand, within DVU0358 at 407.933 kb on - strand, within DVU0358
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source remove 405,087 - DVU0355 0.85 +1.0 405,087 - DVU0355 0.85 -0.7 405,134 + DVU0355 0.88 -0.3 405,161 + DVU0355 0.90 -0.9 405,174 - +0.3 405,174 - +0.8 405,191 + -0.7 405,203 + -0.1 405,226 + +1.2 405,297 + +1.6 405,307 - +1.6 405,342 - +0.6 405,379 + +1.3 405,399 + +0.6 405,468 + +0.7 405,469 + +0.0 405,476 - -1.6 405,491 - +0.6 405,514 - +0.1 405,530 + tag DVU0356 0.10 -1.7 405,640 + tag DVU0356 0.29 +0.7 405,676 + tag DVU0356 0.35 +0.1 405,676 + tag DVU0356 0.35 +1.1 405,681 + tag DVU0356 0.36 +2.2 405,711 + tag DVU0356 0.41 -0.1 405,719 - tag DVU0356 0.43 -0.2 405,757 - tag DVU0356 0.49 -0.0 405,765 + tag DVU0356 0.51 -0.0 405,765 + tag DVU0356 0.51 -0.5 405,817 + tag DVU0356 0.60 +0.1 405,902 + tag DVU0356 0.75 -0.4 405,935 - tag DVU0356 0.80 -0.2 405,944 - tag DVU0356 0.82 -1.2 405,991 + +0.0 405,998 + -0.0 406,003 + -0.2 406,179 - DVU0357 0.13 -0.1 406,181 + DVU0357 0.13 -0.7 406,188 - DVU0357 0.14 +0.1 406,189 - DVU0357 0.14 -0.4 406,189 - DVU0357 0.14 -0.3 406,212 + DVU0357 0.17 -0.0 406,326 - DVU0357 0.29 -0.4 406,332 + DVU0357 0.30 -0.5 406,350 - DVU0357 0.32 -1.4 406,367 + DVU0357 0.34 +0.4 406,431 + DVU0357 0.41 -1.0 406,432 - DVU0357 0.41 -0.6 406,441 + DVU0357 0.42 -0.5 406,561 + DVU0357 0.55 -0.7 406,561 + DVU0357 0.55 -0.2 406,562 + DVU0357 0.55 -0.5 406,569 - DVU0357 0.56 -1.9 406,577 - DVU0357 0.56 -0.4 406,691 - DVU0357 0.69 +0.2 406,742 + DVU0357 0.74 -1.9 406,794 + DVU0357 0.80 +0.4 406,799 + DVU0357 0.81 +0.2 406,799 + DVU0357 0.81 +0.0 406,805 - DVU0357 0.81 -0.1 406,823 + DVU0357 0.83 -0.3 406,876 + DVU0357 0.89 -1.5 406,973 + +1.4 407,088 - tRNA-Thr DVU_tRNA-Thr-1 0.47 +0.8 407,101 + tRNA-Thr DVU_tRNA-Thr-1 0.64 -0.4 407,124 - +0.3 407,221 + +0.3 407,319 + +0.3 407,502 - DVU0358 0.22 +1.5 407,595 - DVU0358 0.34 +2.6 407,595 - DVU0358 0.34 -0.3 407,711 - DVU0358 0.50 -0.7 407,758 - DVU0358 0.56 -0.8 407,881 + DVU0358 0.72 +1.1 407,889 - DVU0358 0.74 +0.8 407,923 - DVU0358 0.78 -1.2 407,928 - DVU0358 0.79 -0.0 407,933 - DVU0358 0.79 -1.3
Or see this region's nucleotide sequence