Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03928 and SMc03929 are separated by 16 nucleotides SMc03929 and SMc03930 are separated by 195 nucleotides SMc03930 and SMc03931 overlap by 8 nucleotides
SMc03928: SMc03928 - hypothetical protein, at 3,077,229 to 3,078,305
SMc03928
SMc03929: SMc03929 - zinc-type alcohol dehydrogenase transmembrane protein, at 3,078,322 to 3,079,497
SMc03929
SMc03930: SMc03930 - sarcosine oxidase subunit gamma, at 3,079,693 to 3,080,247
SMc03930
SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233
SMc03931
Position (kb)
3078
3079
3080 Strain fitness (log2 ratio)
-2
-1
0
1 at 3077.494 kb on - strand, within SMc03928 at 3077.901 kb on + strand, within SMc03928 at 3077.902 kb on - strand, within SMc03928 at 3078.030 kb on + strand, within SMc03928 at 3078.030 kb on + strand, within SMc03928 at 3078.031 kb on - strand, within SMc03928 at 3078.031 kb on - strand, within SMc03928 at 3078.054 kb on + strand, within SMc03928 at 3078.075 kb on + strand, within SMc03928 at 3078.075 kb on + strand, within SMc03928 at 3078.443 kb on + strand, within SMc03929 at 3078.443 kb on + strand, within SMc03929 at 3078.494 kb on + strand, within SMc03929 at 3078.494 kb on + strand, within SMc03929 at 3078.495 kb on - strand, within SMc03929 at 3078.495 kb on - strand, within SMc03929 at 3078.495 kb on - strand, within SMc03929 at 3078.687 kb on + strand, within SMc03929 at 3078.787 kb on - strand, within SMc03929 at 3078.886 kb on - strand, within SMc03929 at 3079.077 kb on + strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.390 kb on - strand at 3079.397 kb on + strand at 3079.398 kb on - strand at 3079.398 kb on - strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.593 kb on + strand at 3079.593 kb on + strand at 3079.776 kb on + strand, within SMc03930 at 3080.325 kb on + strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.403 kb on + strand at 3080.403 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,077,494 - SMc03928 0.25 -2.1 3,077,901 + SMc03928 0.62 +0.0 3,077,902 - SMc03928 0.62 -1.8 3,078,030 + SMc03928 0.74 +0.9 3,078,030 + SMc03928 0.74 +0.1 3,078,031 - SMc03928 0.74 +1.7 3,078,031 - SMc03928 0.74 +0.3 3,078,054 + SMc03928 0.77 -0.5 3,078,075 + SMc03928 0.79 +0.4 3,078,075 + SMc03928 0.79 +0.3 3,078,443 + SMc03929 0.10 -0.3 3,078,443 + SMc03929 0.10 -0.3 3,078,494 + SMc03929 0.15 +0.6 3,078,494 + SMc03929 0.15 +0.4 3,078,495 - SMc03929 0.15 +0.4 3,078,495 - SMc03929 0.15 +0.7 3,078,495 - SMc03929 0.15 +0.5 3,078,687 + SMc03929 0.31 -0.7 3,078,787 - SMc03929 0.40 -0.2 3,078,886 - SMc03929 0.48 -0.6 3,079,077 + SMc03929 0.64 -0.2 3,079,078 - SMc03929 0.64 +0.4 3,079,078 - SMc03929 0.64 -0.8 3,079,078 - SMc03929 0.64 +0.3 3,079,390 - +0.3 3,079,397 + +0.1 3,079,398 - -1.8 3,079,398 - -0.2 3,079,590 + -1.8 3,079,590 + +1.1 3,079,590 + +0.2 3,079,593 + -0.4 3,079,593 + +0.1 3,079,776 + SMc03930 0.15 +0.2 3,080,325 + +0.0 3,080,326 - -0.8 3,080,326 - -0.2 3,080,326 - +0.3 3,080,403 + -0.0 3,080,403 + -0.7
Or see this region's nucleotide sequence