Strain Fitness in Sinorhizobium meliloti 1021 around SMc03809

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03808 and SMc03809 are separated by 135 nucleotidesSMc03809 and SMc03810 are separated by 211 nucleotides SMc03808: SMc03808 - cell division transmembrane protein, at 3,473,291 to 3,475,936 SMc03808 SMc03809: SMc03809 - hypothetical protein, at 3,476,072 to 3,476,734 SMc03809 SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755 SMc03810 Position (kb) 3476 3477Strain fitness (log2 ratio) -1 0 1at 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.899 kb on + strandat 3476.810 kb on - strandat 3476.959 kb on + strandat 3477.001 kb on + strandat 3477.365 kb on + strand, within SMc03810at 3477.366 kb on - strand, within SMc03810at 3477.518 kb on - strand, within SMc03810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,475,819 + -0.7
3,475,819 + -0.3
3,475,819 + -0.9
3,475,899 + -0.4
3,476,810 - -0.1
3,476,959 + -0.6
3,477,001 + +1.2
3,477,365 + SMc03810 0.52 +0.1
3,477,366 - SMc03810 0.52 -0.1
3,477,518 - SMc03810 0.71 +0.2

Or see this region's nucleotide sequence