Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1789 and SMa5032 are separated by 552 nucleotides SMa5032 and SMa1793 are separated by 383 nucleotides
SMa1789: SMa1789 - CyaI4 adenylate/guanylate cyclase, at 1,012,465 to 1,015,821
SMa1789
SMa5032: SMa5032 - hypothetical protein, at 1,016,374 to 1,016,556
SMa5032
SMa1793: SMa1793 - hypothetical protein, at 1,016,940 to 1,017,362
SMa1793
Position (kb)
1016
1017 Strain fitness (log2 ratio)
-1
0
1 at 1015.611 kb on + strand at 1015.611 kb on + strand at 1015.611 kb on + strand at 1015.612 kb on - strand at 1015.748 kb on - strand at 1015.774 kb on - strand at 1015.814 kb on + strand at 1015.858 kb on + strand at 1015.859 kb on - strand at 1015.859 kb on - strand at 1015.862 kb on - strand at 1015.888 kb on + strand at 1015.889 kb on - strand at 1015.933 kb on - strand at 1016.080 kb on + strand at 1016.081 kb on - strand at 1016.104 kb on + strand at 1016.105 kb on - strand at 1016.105 kb on - strand at 1016.105 kb on - strand at 1016.113 kb on + strand at 1016.113 kb on + strand at 1016.113 kb on + strand at 1016.113 kb on + strand at 1016.114 kb on - strand at 1016.115 kb on + strand at 1016.115 kb on + strand at 1016.207 kb on + strand at 1016.208 kb on - strand at 1016.320 kb on - strand at 1016.320 kb on - strand at 1016.415 kb on + strand, within SMa5032 at 1016.415 kb on + strand, within SMa5032 at 1016.484 kb on - strand, within SMa5032 at 1016.524 kb on - strand, within SMa5032 at 1016.648 kb on + strand at 1016.649 kb on - strand at 1016.691 kb on + strand at 1016.691 kb on + strand at 1016.715 kb on - strand at 1016.825 kb on + strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.826 kb on - strand at 1016.847 kb on + strand at 1016.861 kb on + strand at 1016.926 kb on + strand at 1016.926 kb on + strand at 1016.957 kb on + strand at 1016.957 kb on + strand at 1016.982 kb on - strand at 1016.982 kb on - strand at 1017.036 kb on + strand, within SMa1793 at 1017.036 kb on + strand, within SMa1793 at 1017.037 kb on - strand, within SMa1793 at 1017.118 kb on - strand, within SMa1793 at 1017.119 kb on + strand, within SMa1793 at 1017.119 kb on + strand, within SMa1793 at 1017.178 kb on + strand, within SMa1793 at 1017.179 kb on - strand, within SMa1793 at 1017.361 kb on - strand at 1017.361 kb on - strand at 1017.397 kb on + strand at 1017.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,015,611 + -0.1 1,015,611 + +0.0 1,015,611 + -0.4 1,015,612 - -0.0 1,015,748 - +0.8 1,015,774 - +0.6 1,015,814 + -0.6 1,015,858 + -0.8 1,015,859 - -0.6 1,015,859 - -0.9 1,015,862 - -1.4 1,015,888 + +0.0 1,015,889 - +0.2 1,015,933 - +0.2 1,016,080 + +0.1 1,016,081 - -0.5 1,016,104 + +0.1 1,016,105 - -1.1 1,016,105 - +0.9 1,016,105 - -0.9 1,016,113 + +0.2 1,016,113 + -0.1 1,016,113 + -0.6 1,016,113 + +1.0 1,016,114 - +0.0 1,016,115 + -0.0 1,016,115 + +1.3 1,016,207 + +0.2 1,016,208 - -0.1 1,016,320 - -1.3 1,016,320 - -0.1 1,016,415 + SMa5032 0.22 -0.4 1,016,415 + SMa5032 0.22 +0.9 1,016,484 - SMa5032 0.60 +0.9 1,016,524 - SMa5032 0.82 +0.9 1,016,648 + +0.8 1,016,649 - +0.5 1,016,691 + +0.6 1,016,691 + +0.9 1,016,715 - -0.2 1,016,825 + +0.0 1,016,826 - +1.5 1,016,826 - +0.1 1,016,826 - -0.2 1,016,826 - +0.1 1,016,826 - -0.0 1,016,826 - -0.5 1,016,826 - +0.1 1,016,847 + -0.3 1,016,861 + -0.2 1,016,926 + +0.2 1,016,926 + +0.8 1,016,957 + -0.6 1,016,957 + -0.7 1,016,982 - +0.4 1,016,982 - +0.6 1,017,036 + SMa1793 0.23 -0.4 1,017,036 + SMa1793 0.23 +0.2 1,017,037 - SMa1793 0.23 -0.6 1,017,118 - SMa1793 0.42 -1.4 1,017,119 + SMa1793 0.42 -0.1 1,017,119 + SMa1793 0.42 +0.9 1,017,178 + SMa1793 0.56 -0.7 1,017,179 - SMa1793 0.57 +0.8 1,017,361 - +0.8 1,017,361 - +0.2 1,017,397 + -1.4 1,017,397 + -1.5
Or see this region's nucleotide sequence