Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21165

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21163 and SM_b21164 are separated by 2 nucleotidesSM_b21164 and SM_b21165 are separated by 1 nucleotidesSM_b21165 and SM_b21166 overlap by 4 nucleotides SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) (from data), at 908,169 to 909,842 _b21163 SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 909,845 to 910,660 _b21164 SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 910,662 to 912,197 _b21165 SM_b21166: SM_b21166 - Imidazolonepropionase (EC 3.5.2.7) (from data), at 912,194 to 913,609 _b21166 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -1 0 1at 909.691 kb on + strandat 909.821 kb on + strandat 909.822 kb on - strandat 910.154 kb on - strand, within SM_b21164at 910.325 kb on + strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.364 kb on - strand, within SM_b21164at 910.454 kb on + strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.513 kb on - strand, within SM_b21164at 910.759 kb on + strandat 910.759 kb on + strandat 910.759 kb on + strandat 911.104 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.359 kb on + strand, within SM_b21165at 911.360 kb on - strand, within SM_b21165at 911.360 kb on - strand, within SM_b21165at 911.459 kb on + strand, within SM_b21165at 911.744 kb on + strand, within SM_b21165at 911.745 kb on - strand, within SM_b21165at 911.745 kb on - strand, within SM_b21165at 911.938 kb on - strand, within SM_b21165at 912.040 kb on + strand, within SM_b21165at 912.142 kb on + strandat 912.142 kb on + strandat 912.143 kb on - strandat 912.255 kb on + strandat 912.543 kb on + strand, within SM_b21166at 912.616 kb on - strand, within SM_b21166at 912.645 kb on + strand, within SM_b21166at 912.850 kb on - strand, within SM_b21166at 912.900 kb on + strand, within SM_b21166at 912.900 kb on + strand, within SM_b21166at 912.998 kb on - strand, within SM_b21166at 913.137 kb on + strand, within SM_b21166at 913.138 kb on - strand, within SM_b21166at 913.195 kb on + strand, within SM_b21166at 913.195 kb on + strand, within SM_b21166

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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909,691 + -0.4
909,821 + +0.3
909,822 - +0.3
910,154 - SM_b21164 0.38 +0.2
910,325 + SM_b21164 0.59 +1.2
910,326 - SM_b21164 0.59 +1.1
910,326 - SM_b21164 0.59 -0.1
910,364 - SM_b21164 0.64 -0.1
910,454 + SM_b21164 0.75 -0.3
910,455 - SM_b21164 0.75 -0.1
910,455 - SM_b21164 0.75 +0.0
910,455 - SM_b21164 0.75 +0.6
910,455 - SM_b21164 0.75 +0.2
910,513 - SM_b21164 0.82 -1.2
910,759 + -1.2
910,759 + -0.5
910,759 + +1.5
911,104 + SM_b21165 0.29 +0.1
911,359 + SM_b21165 0.45 -0.4
911,359 + SM_b21165 0.45 +0.1
911,359 + SM_b21165 0.45 +0.3
911,360 - SM_b21165 0.45 +1.0
911,360 - SM_b21165 0.45 +1.5
911,459 + SM_b21165 0.52 -0.1
911,744 + SM_b21165 0.70 -0.7
911,745 - SM_b21165 0.71 +0.1
911,745 - SM_b21165 0.71 +0.5
911,938 - SM_b21165 0.83 +0.0
912,040 + SM_b21165 0.90 -0.2
912,142 + +0.7
912,142 + -0.1
912,143 - +1.2
912,255 + -0.4
912,543 + SM_b21166 0.25 +0.1
912,616 - SM_b21166 0.30 +0.3
912,645 + SM_b21166 0.32 +0.0
912,850 - SM_b21166 0.46 -1.1
912,900 + SM_b21166 0.50 -0.3
912,900 + SM_b21166 0.50 +0.0
912,998 - SM_b21166 0.57 +0.0
913,137 + SM_b21166 0.67 +0.3
913,138 - SM_b21166 0.67 -1.6
913,195 + SM_b21166 0.71 +0.4
913,195 + SM_b21166 0.71 -0.4

Or see this region's nucleotide sequence