Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20895

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20894 and SM_b20895 are separated by 207 nucleotidesSM_b20895 and SM_b20896 are separated by 346 nucleotides SM_b20894: SM_b20894 - L-arabinose ABC transporter, ATPase component (from data), at 1,301,299 to 1,302,819 _b20894 SM_b20895: SM_b20895 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,303,027 to 1,304,094 _b20895 SM_b20896: SM_b20896 - LysR family transcriptional regulator, at 1,304,441 to 1,305,349 _b20896 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1302.027 kb on - strand, within SM_b20894at 1302.639 kb on - strand, within SM_b20894at 1302.657 kb on - strand, within SM_b20894at 1302.657 kb on - strand, within SM_b20894at 1302.802 kb on + strandat 1302.803 kb on - strandat 1302.826 kb on + strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.835 kb on + strandat 1302.835 kb on + strandat 1302.982 kb on + strandat 1302.983 kb on - strandat 1303.052 kb on + strandat 1303.053 kb on - strandat 1303.053 kb on - strandat 1303.148 kb on + strand, within SM_b20895at 1303.148 kb on + strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.254 kb on - strand, within SM_b20895at 1303.423 kb on - strand, within SM_b20895at 1303.715 kb on + strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.718 kb on + strand, within SM_b20895at 1303.754 kb on + strand, within SM_b20895at 1303.755 kb on - strand, within SM_b20895at 1303.920 kb on + strand, within SM_b20895at 1304.193 kb on + strandat 1304.193 kb on + strandat 1304.194 kb on - strandat 1304.214 kb on + strandat 1304.214 kb on + strandat 1304.215 kb on - strandat 1304.220 kb on - strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.242 kb on - strandat 1304.242 kb on - strandat 1304.242 kb on - strandat 1305.037 kb on + strand, within SM_b20896at 1305.038 kb on - strand, within SM_b20896

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,302,027 - SM_b20894 0.48 -2.3
1,302,639 - SM_b20894 0.88 -4.1
1,302,657 - SM_b20894 0.89 -0.7
1,302,657 - SM_b20894 0.89 -3.0
1,302,802 + -3.5
1,302,803 - -3.9
1,302,826 + -1.1
1,302,827 - -4.0
1,302,827 - -3.1
1,302,827 - -2.8
1,302,827 - -3.5
1,302,835 + -0.3
1,302,835 + -3.3
1,302,982 + -1.9
1,302,983 - +0.1
1,303,052 + -4.3
1,303,053 - -3.9
1,303,053 - -0.7
1,303,148 + SM_b20895 0.11 -3.5
1,303,148 + SM_b20895 0.11 -4.1
1,303,149 - SM_b20895 0.11 -2.1
1,303,149 - SM_b20895 0.11 -1.1
1,303,149 - SM_b20895 0.11 -2.6
1,303,254 - SM_b20895 0.21 -2.0
1,303,423 - SM_b20895 0.37 -2.7
1,303,715 + SM_b20895 0.64 -3.8
1,303,716 - SM_b20895 0.65 -2.3
1,303,716 - SM_b20895 0.65 -2.3
1,303,716 - SM_b20895 0.65 -2.4
1,303,718 + SM_b20895 0.65 -1.7
1,303,754 + SM_b20895 0.68 -3.1
1,303,755 - SM_b20895 0.68 -3.8
1,303,920 + SM_b20895 0.84 -1.8
1,304,193 + -3.6
1,304,193 + -2.7
1,304,194 - -1.1
1,304,214 + -2.6
1,304,214 + -2.2
1,304,215 - -1.1
1,304,220 - +1.9
1,304,241 + -4.4
1,304,241 + -3.5
1,304,241 + -2.5
1,304,241 + -3.0
1,304,242 - +1.7
1,304,242 - -1.0
1,304,242 - +0.6
1,305,037 + SM_b20896 0.66 -0.6
1,305,038 - SM_b20896 0.66 -0.6

Or see this region's nucleotide sequence