Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20894 and SM_b20895 are separated by 207 nucleotides SM_b20895 and SM_b20896 are separated by 346 nucleotides
SM_b20894: SM_b20894 - L-arabinose ABC transporter, ATPase component (from data) , at 1,301,299 to 1,302,819
_b20894
SM_b20895: SM_b20895 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,303,027 to 1,304,094
_b20895
SM_b20896: SM_b20896 - LysR family transcriptional regulator, at 1,304,441 to 1,305,349
_b20896
Position (kb)
1303
1304
1305 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1302.027 kb on - strand, within SM_b20894 at 1302.639 kb on - strand, within SM_b20894 at 1302.657 kb on - strand, within SM_b20894 at 1302.657 kb on - strand, within SM_b20894 at 1302.802 kb on + strand at 1302.803 kb on - strand at 1302.826 kb on + strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.827 kb on - strand at 1302.835 kb on + strand at 1302.835 kb on + strand at 1302.982 kb on + strand at 1302.983 kb on - strand at 1303.052 kb on + strand at 1303.053 kb on - strand at 1303.053 kb on - strand at 1303.148 kb on + strand, within SM_b20895 at 1303.148 kb on + strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.149 kb on - strand, within SM_b20895 at 1303.254 kb on - strand, within SM_b20895 at 1303.423 kb on - strand, within SM_b20895 at 1303.715 kb on + strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.716 kb on - strand, within SM_b20895 at 1303.718 kb on + strand, within SM_b20895 at 1303.754 kb on + strand, within SM_b20895 at 1303.755 kb on - strand, within SM_b20895 at 1303.920 kb on + strand, within SM_b20895 at 1304.193 kb on + strand at 1304.193 kb on + strand at 1304.194 kb on - strand at 1304.214 kb on + strand at 1304.214 kb on + strand at 1304.215 kb on - strand at 1304.220 kb on - strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.241 kb on + strand at 1304.242 kb on - strand at 1304.242 kb on - strand at 1304.242 kb on - strand at 1305.037 kb on + strand, within SM_b20896 at 1305.038 kb on - strand, within SM_b20896
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,302,027 - SM_b20894 0.48 -2.3 1,302,639 - SM_b20894 0.88 -4.1 1,302,657 - SM_b20894 0.89 -0.7 1,302,657 - SM_b20894 0.89 -3.0 1,302,802 + -3.5 1,302,803 - -3.9 1,302,826 + -1.1 1,302,827 - -4.0 1,302,827 - -3.1 1,302,827 - -2.8 1,302,827 - -3.5 1,302,835 + -0.3 1,302,835 + -3.3 1,302,982 + -1.9 1,302,983 - +0.1 1,303,052 + -4.3 1,303,053 - -3.9 1,303,053 - -0.7 1,303,148 + SM_b20895 0.11 -3.5 1,303,148 + SM_b20895 0.11 -4.1 1,303,149 - SM_b20895 0.11 -2.1 1,303,149 - SM_b20895 0.11 -1.1 1,303,149 - SM_b20895 0.11 -2.6 1,303,254 - SM_b20895 0.21 -2.0 1,303,423 - SM_b20895 0.37 -2.7 1,303,715 + SM_b20895 0.64 -3.8 1,303,716 - SM_b20895 0.65 -2.3 1,303,716 - SM_b20895 0.65 -2.3 1,303,716 - SM_b20895 0.65 -2.4 1,303,718 + SM_b20895 0.65 -1.7 1,303,754 + SM_b20895 0.68 -3.1 1,303,755 - SM_b20895 0.68 -3.8 1,303,920 + SM_b20895 0.84 -1.8 1,304,193 + -3.6 1,304,193 + -2.7 1,304,194 - -1.1 1,304,214 + -2.6 1,304,214 + -2.2 1,304,215 - -1.1 1,304,220 - +1.9 1,304,241 + -4.4 1,304,241 + -3.5 1,304,241 + -2.5 1,304,241 + -3.0 1,304,242 - +1.7 1,304,242 - -1.0 1,304,242 - +0.6 1,305,037 + SM_b20896 0.66 -0.6 1,305,038 - SM_b20896 0.66 -0.6
Or see this region's nucleotide sequence