Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2265

Experiment: KB with Totarol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2264 and Psyr_2265 are separated by 16 nucleotidesPsyr_2265 and Psyr_2266 are separated by 8 nucleotides Psyr_2264: Psyr_2264 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,629,325 to 2,630,326 _2264 Psyr_2265: Psyr_2265 - Binding-protein-dependent transport systems inner membrane component, at 2,630,343 to 2,631,251 _2265 Psyr_2266: Psyr_2266 - Binding-protein-dependent transport systems inner membrane component, at 2,631,260 to 2,632,177 _2266 Position (kb) 2630 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2629.582 kb on - strand, within Psyr_2264at 2629.644 kb on + strand, within Psyr_2264at 2629.644 kb on + strand, within Psyr_2264at 2629.645 kb on - strand, within Psyr_2264at 2630.315 kb on + strandat 2630.315 kb on + strandat 2630.316 kb on - strandat 2630.316 kb on - strandat 2630.316 kb on - strandat 2630.332 kb on + strandat 2630.464 kb on + strand, within Psyr_2265at 2630.464 kb on + strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.872 kb on + strand, within Psyr_2265at 2630.977 kb on + strand, within Psyr_2265at 2631.011 kb on - strand, within Psyr_2265at 2631.262 kb on - strandat 2631.262 kb on - strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.328 kb on - strandat 2631.328 kb on - strandat 2631.328 kb on - strandat 2631.570 kb on + strand, within Psyr_2266at 2631.570 kb on + strand, within Psyr_2266at 2631.633 kb on + strand, within Psyr_2266at 2631.637 kb on - strand, within Psyr_2266at 2631.771 kb on - strand, within Psyr_2266at 2631.919 kb on - strand, within Psyr_2266

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Totarol 10 mM
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2,629,582 - Psyr_2264 0.26 -0.3
2,629,644 + Psyr_2264 0.32 -0.8
2,629,644 + Psyr_2264 0.32 +2.2
2,629,645 - Psyr_2264 0.32 +0.5
2,630,315 + +0.7
2,630,315 + +0.9
2,630,316 - -0.1
2,630,316 - -0.1
2,630,316 - -0.7
2,630,332 + -1.4
2,630,464 + Psyr_2265 0.13 -1.3
2,630,464 + Psyr_2265 0.13 +0.1
2,630,465 - Psyr_2265 0.13 -2.0
2,630,465 - Psyr_2265 0.13 -1.2
2,630,465 - Psyr_2265 0.13 -0.7
2,630,872 + Psyr_2265 0.58 -0.4
2,630,977 + Psyr_2265 0.70 -1.3
2,631,011 - Psyr_2265 0.73 -0.1
2,631,262 - -0.7
2,631,262 - -0.1
2,631,327 + -0.5
2,631,327 + -0.8
2,631,327 + +3.7
2,631,327 + +0.3
2,631,327 + +3.5
2,631,327 + -1.1
2,631,327 + -0.5
2,631,328 - -1.7
2,631,328 - +1.2
2,631,328 - -0.0
2,631,570 + Psyr_2266 0.34 -0.7
2,631,570 + Psyr_2266 0.34 -0.2
2,631,633 + Psyr_2266 0.41 +0.7
2,631,637 - Psyr_2266 0.41 -0.7
2,631,771 - Psyr_2266 0.56 +3.2
2,631,919 - Psyr_2266 0.72 -1.2

Or see this region's nucleotide sequence