Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0141

Experiment: KB with Totarol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0140 and Psyr_0141 overlap by 1 nucleotidesPsyr_0141 and Psyr_0142 are separated by 1 nucleotides Psyr_0140: Psyr_0140 - Binding-protein-dependent transport systems inner membrane component, at 151,342 to 152,409 _0140 Psyr_0141: Psyr_0141 - Binding-protein-dependent transport systems inner membrane component, at 152,409 to 153,431 _0141 Psyr_0142: Psyr_0142 - ABC transporter, at 153,433 to 155,016 _0142 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 151.585 kb on + strand, within Psyr_0140at 151.586 kb on - strand, within Psyr_0140at 151.636 kb on + strand, within Psyr_0140at 151.636 kb on + strand, within Psyr_0140at 151.637 kb on - strand, within Psyr_0140at 151.750 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.900 kb on + strand, within Psyr_0140at 151.901 kb on - strand, within Psyr_0140at 151.901 kb on - strand, within Psyr_0140at 151.978 kb on + strand, within Psyr_0140at 151.978 kb on + strand, within Psyr_0140at 151.978 kb on + strand, within Psyr_0140at 151.978 kb on + strand, within Psyr_0140at 151.979 kb on - strand, within Psyr_0140at 151.979 kb on - strand, within Psyr_0140at 152.083 kb on + strand, within Psyr_0140at 152.131 kb on + strand, within Psyr_0140at 152.256 kb on + strand, within Psyr_0140at 152.256 kb on + strand, within Psyr_0140at 152.257 kb on - strand, within Psyr_0140at 152.362 kb on + strandat 152.363 kb on - strandat 152.363 kb on - strandat 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.574 kb on + strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.575 kb on - strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.595 kb on + strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.596 kb on - strand, within Psyr_0141at 152.640 kb on + strand, within Psyr_0141at 152.641 kb on - strand, within Psyr_0141at 152.652 kb on + strand, within Psyr_0141at 152.652 kb on + strand, within Psyr_0141at 152.653 kb on - strand, within Psyr_0141at 152.653 kb on - strand, within Psyr_0141at 152.653 kb on - strand, within Psyr_0141at 152.653 kb on - strand, within Psyr_0141at 152.653 kb on - strand, within Psyr_0141at 152.716 kb on - strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.730 kb on + strand, within Psyr_0141at 152.731 kb on - strand, within Psyr_0141at 152.911 kb on - strand, within Psyr_0141at 152.979 kb on + strand, within Psyr_0141at 152.979 kb on + strand, within Psyr_0141at 152.980 kb on - strand, within Psyr_0141at 152.980 kb on - strand, within Psyr_0141at 153.111 kb on + strand, within Psyr_0141at 153.111 kb on + strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.112 kb on - strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.201 kb on + strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 153.202 kb on - strand, within Psyr_0141at 154.171 kb on + strand, within Psyr_0142

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Totarol 10 mM
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151,585 + Psyr_0140 0.23 -1.3
151,586 - Psyr_0140 0.23 +0.3
151,636 + Psyr_0140 0.28 +0.4
151,636 + Psyr_0140 0.28 -1.2
151,637 - Psyr_0140 0.28 -0.3
151,750 + Psyr_0140 0.38 -2.2
151,900 + Psyr_0140 0.52 -0.1
151,900 + Psyr_0140 0.52 +1.0
151,900 + Psyr_0140 0.52 +1.0
151,900 + Psyr_0140 0.52 +0.4
151,900 + Psyr_0140 0.52 +0.5
151,900 + Psyr_0140 0.52 -0.7
151,901 - Psyr_0140 0.52 +0.2
151,901 - Psyr_0140 0.52 +0.3
151,978 + Psyr_0140 0.60 +0.3
151,978 + Psyr_0140 0.60 +0.7
151,978 + Psyr_0140 0.60 +2.1
151,978 + Psyr_0140 0.60 -1.7
151,979 - Psyr_0140 0.60 -0.5
151,979 - Psyr_0140 0.60 +0.9
152,083 + Psyr_0140 0.69 -0.4
152,131 + Psyr_0140 0.74 -0.1
152,256 + Psyr_0140 0.86 -1.3
152,256 + Psyr_0140 0.86 -1.3
152,257 - Psyr_0140 0.86 -0.2
152,362 + -1.7
152,363 - -0.7
152,363 - -1.4
152,574 + Psyr_0141 0.16 -1.3
152,574 + Psyr_0141 0.16 +1.2
152,574 + Psyr_0141 0.16 +0.9
152,574 + Psyr_0141 0.16 -0.5
152,574 + Psyr_0141 0.16 +1.7
152,574 + Psyr_0141 0.16 +0.1
152,574 + Psyr_0141 0.16 +0.7
152,574 + Psyr_0141 0.16 -0.7
152,575 - Psyr_0141 0.16 +0.5
152,575 - Psyr_0141 0.16 -0.6
152,575 - Psyr_0141 0.16 +0.5
152,575 - Psyr_0141 0.16 -0.1
152,575 - Psyr_0141 0.16 -1.5
152,595 + Psyr_0141 0.18 +0.6
152,595 + Psyr_0141 0.18 +0.9
152,595 + Psyr_0141 0.18 +0.9
152,595 + Psyr_0141 0.18 +0.2
152,595 + Psyr_0141 0.18 +1.7
152,595 + Psyr_0141 0.18 +0.8
152,595 + Psyr_0141 0.18 +0.0
152,595 + Psyr_0141 0.18 -0.5
152,595 + Psyr_0141 0.18 +1.1
152,596 - Psyr_0141 0.18 -2.1
152,596 - Psyr_0141 0.18 -0.3
152,596 - Psyr_0141 0.18 -0.4
152,596 - Psyr_0141 0.18 -1.3
152,596 - Psyr_0141 0.18 +0.2
152,596 - Psyr_0141 0.18 +0.3
152,596 - Psyr_0141 0.18 +1.0
152,596 - Psyr_0141 0.18 +0.7
152,596 - Psyr_0141 0.18 +0.1
152,596 - Psyr_0141 0.18 +0.7
152,596 - Psyr_0141 0.18 +1.0
152,640 + Psyr_0141 0.23 +0.4
152,641 - Psyr_0141 0.23 -0.2
152,652 + Psyr_0141 0.24 +0.4
152,652 + Psyr_0141 0.24 +0.3
152,653 - Psyr_0141 0.24 +1.2
152,653 - Psyr_0141 0.24 -1.0
152,653 - Psyr_0141 0.24 +0.0
152,653 - Psyr_0141 0.24 -0.5
152,653 - Psyr_0141 0.24 +0.6
152,716 - Psyr_0141 0.30 +2.0
152,730 + Psyr_0141 0.31 +1.9
152,730 + Psyr_0141 0.31 +0.8
152,730 + Psyr_0141 0.31 +1.1
152,730 + Psyr_0141 0.31 -0.2
152,730 + Psyr_0141 0.31 +2.0
152,730 + Psyr_0141 0.31 -0.2
152,730 + Psyr_0141 0.31 -1.0
152,731 - Psyr_0141 0.31 -0.2
152,911 - Psyr_0141 0.49 +0.9
152,979 + Psyr_0141 0.56 -0.3
152,979 + Psyr_0141 0.56 +0.5
152,980 - Psyr_0141 0.56 -0.6
152,980 - Psyr_0141 0.56 +0.1
153,111 + Psyr_0141 0.69 +0.5
153,111 + Psyr_0141 0.69 +4.1
153,112 - Psyr_0141 0.69 -2.3
153,112 - Psyr_0141 0.69 +0.9
153,112 - Psyr_0141 0.69 +0.5
153,112 - Psyr_0141 0.69 +0.2
153,112 - Psyr_0141 0.69 -0.5
153,112 - Psyr_0141 0.69 -0.1
153,201 + Psyr_0141 0.77 +0.3
153,201 + Psyr_0141 0.77 -0.6
153,201 + Psyr_0141 0.77 +0.2
153,202 - Psyr_0141 0.78 -1.7
153,202 - Psyr_0141 0.78 +1.1
154,171 + Psyr_0142 0.47 -0.3

Or see this region's nucleotide sequence