Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30015 and AO356_30020 are separated by 289 nucleotides AO356_30020 and AO356_30025 overlap by 4 nucleotides AO356_30025 and AO356_30030 are separated by 9 nucleotides
AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229
_30015
AO356_30020: AO356_30020 - hypothetical protein, at 7,005,519 to 7,006,031
_30020
AO356_30025: AO356_30025 - ferredoxin, at 7,006,028 to 7,006,957
_30025
AO356_30030: AO356_30030 - hypothetical protein, at 7,006,967 to 7,007,983
_30030
Position (kb) 7005
7006
7007 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 7004.678 kb on + strand, within AO356_30015 at 7004.678 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.804 kb on - strand, within AO356_30015 at 7005.332 kb on + strand at 7005.378 kb on + strand at 7005.379 kb on - strand at 7005.379 kb on - strand at 7005.392 kb on + strand at 7005.435 kb on - strand at 7005.751 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7006.191 kb on - strand, within AO356_30025 at 7006.275 kb on - strand, within AO356_30025 at 7006.451 kb on + strand, within AO356_30025 at 7006.452 kb on - strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 7,004,678 + AO356_30015 0.49 -1.0 7,004,678 + AO356_30015 0.49 +1.5 7,004,738 + AO356_30015 0.54 -1.4 7,004,738 + AO356_30015 0.54 -2.9 7,004,804 - AO356_30015 0.61 -1.4 7,005,332 + +1.3 7,005,378 + +0.7 7,005,379 - +0.1 7,005,379 - +0.7 7,005,392 + -1.1 7,005,435 - +0.2 7,005,751 - AO356_30020 0.45 +0.9 7,005,865 - AO356_30020 0.67 +1.2 7,005,865 - AO356_30020 0.67 -0.9 7,005,865 - AO356_30020 0.67 -2.4 7,005,865 - AO356_30020 0.67 -1.7 7,006,191 - AO356_30025 0.18 +1.0 7,006,275 - AO356_30025 0.27 +1.2 7,006,451 + AO356_30025 0.45 -0.3 7,006,452 - AO356_30025 0.46 -0.2 7,006,481 + AO356_30025 0.49 +0.7 7,006,481 + AO356_30025 0.49 +0.5 7,006,481 + AO356_30025 0.49 +0.0 7,006,955 + -1.8
Or see this region's nucleotide sequence