Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29515

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29505 and AO356_29510 are separated by 1 nucleotidesAO356_29510 and AO356_29515 are separated by 52 nucleotidesAO356_29515 and AO356_29520 are separated by 325 nucleotides AO356_29505: AO356_29505 - biopolymer transporter ExbD, at 6,862,156 to 6,862,557 _29505 AO356_29510: AO356_29510 - biopolymer transporter ExbB, at 6,862,559 to 6,863,278 _29510 AO356_29515: AO356_29515 - energy transducer TonB, at 6,863,331 to 6,864,140 _29515 AO356_29520: AO356_29520 - TonB-dependent receptor, at 6,864,466 to 6,866,805 _29520 Position (kb) 6863 6864 6865Strain fitness (log2 ratio) -2 -1 0 1 2at 6862.465 kb on - strand, within AO356_29505at 6862.465 kb on - strand, within AO356_29505at 6862.654 kb on + strand, within AO356_29510at 6862.655 kb on - strand, within AO356_29510at 6862.656 kb on + strandat 6862.656 kb on + strand, within AO356_29510at 6862.656 kb on + strand, within AO356_29510at 6862.657 kb on - strand, within AO356_29510at 6862.657 kb on - strand, within AO356_29510at 6862.657 kb on - strand, within AO356_29510at 6862.716 kb on + strand, within AO356_29510at 6862.716 kb on + strand, within AO356_29510at 6862.717 kb on - strand, within AO356_29510at 6862.717 kb on - strand, within AO356_29510at 6862.722 kb on + strand, within AO356_29510at 6862.723 kb on - strand, within AO356_29510at 6862.796 kb on + strand, within AO356_29510at 6862.877 kb on + strand, within AO356_29510at 6862.878 kb on - strand, within AO356_29510at 6862.878 kb on - strand, within AO356_29510at 6863.046 kb on + strand, within AO356_29510at 6863.162 kb on + strand, within AO356_29510at 6863.271 kb on - strandat 6863.271 kb on - strandat 6863.271 kb on - strandat 6863.328 kb on + strandat 6863.328 kb on + strandat 6863.328 kb on + strandat 6863.328 kb on + strandat 6863.328 kb on + strandat 6863.329 kb on - strandat 6863.329 kb on - strandat 6863.329 kb on - strandat 6863.329 kb on - strandat 6863.333 kb on - strandat 6863.351 kb on + strandat 6863.351 kb on + strandat 6863.355 kb on + strandat 6863.355 kb on + strandat 6863.356 kb on - strandat 6863.356 kb on - strandat 6863.356 kb on - strandat 6863.356 kb on - strandat 6863.356 kb on - strandat 6863.584 kb on + strand, within AO356_29515at 6863.585 kb on - strand, within AO356_29515at 6864.206 kb on - strandat 6864.325 kb on + strandat 6864.362 kb on + strandat 6864.363 kb on - strandat 6864.455 kb on + strandat 6864.455 kb on + strandat 6864.456 kb on - strandat 6864.456 kb on - strandat 6864.456 kb on - strandat 6864.467 kb on + strandat 6864.467 kb on + strandat 6864.476 kb on + strandat 6864.476 kb on + strandat 6864.477 kb on - strandat 6864.557 kb on + strandat 6864.557 kb on + strandat 6864.617 kb on + strandat 6864.617 kb on + strandat 6864.618 kb on - strandat 6864.656 kb on + strandat 6864.657 kb on - strandat 6864.719 kb on + strand, within AO356_29520at 6864.720 kb on - strand, within AO356_29520at 6864.720 kb on - strand, within AO356_29520at 6864.734 kb on + strand, within AO356_29520at 6864.734 kb on + strand, within AO356_29520at 6864.735 kb on - strand, within AO356_29520at 6864.768 kb on - strand, within AO356_29520at 6864.887 kb on + strand, within AO356_29520at 6864.887 kb on + strand, within AO356_29520at 6864.888 kb on - strand, within AO356_29520at 6864.888 kb on - strand, within AO356_29520at 6864.888 kb on - strand, within AO356_29520at 6864.957 kb on + strand, within AO356_29520at 6864.958 kb on - strand, within AO356_29520at 6865.007 kb on + strand, within AO356_29520at 6865.008 kb on - strand, within AO356_29520at 6865.031 kb on + strand, within AO356_29520at 6865.031 kb on + strand, within AO356_29520at 6865.031 kb on + strand, within AO356_29520

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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6,862,465 - AO356_29505 0.77 -0.4
6,862,465 - AO356_29505 0.77 -1.1
6,862,654 + AO356_29510 0.13 -0.4
6,862,655 - AO356_29510 0.13 -0.0
6,862,656 + -0.3
6,862,656 + AO356_29510 0.13 -1.3
6,862,656 + AO356_29510 0.13 -0.3
6,862,657 - AO356_29510 0.14 -1.9
6,862,657 - AO356_29510 0.14 +0.2
6,862,657 - AO356_29510 0.14 -1.4
6,862,716 + AO356_29510 0.22 -0.1
6,862,716 + AO356_29510 0.22 -0.8
6,862,717 - AO356_29510 0.22 +1.8
6,862,717 - AO356_29510 0.22 +0.1
6,862,722 + AO356_29510 0.23 +0.7
6,862,723 - AO356_29510 0.23 -1.5
6,862,796 + AO356_29510 0.33 -0.5
6,862,877 + AO356_29510 0.44 -0.4
6,862,878 - AO356_29510 0.44 +0.3
6,862,878 - AO356_29510 0.44 -1.2
6,863,046 + AO356_29510 0.68 +0.2
6,863,162 + AO356_29510 0.84 +1.2
6,863,271 - -1.3
6,863,271 - +0.5
6,863,271 - +1.4
6,863,328 + +0.0
6,863,328 + -0.5
6,863,328 + -0.4
6,863,328 + -0.8
6,863,328 + +2.1
6,863,329 - +0.6
6,863,329 - -1.5
6,863,329 - +0.3
6,863,329 - +0.3
6,863,333 - -1.0
6,863,351 + +0.7
6,863,351 + -2.1
6,863,355 + +0.6
6,863,355 + +0.5
6,863,356 - -1.6
6,863,356 - +1.2
6,863,356 - +0.3
6,863,356 - -0.5
6,863,356 - -1.0
6,863,584 + AO356_29515 0.31 -0.3
6,863,585 - AO356_29515 0.31 +0.3
6,864,206 - -0.2
6,864,325 + +1.0
6,864,362 + -0.4
6,864,363 - +1.4
6,864,455 + +0.9
6,864,455 + +0.5
6,864,456 - +0.6
6,864,456 - -1.1
6,864,456 - +0.1
6,864,467 + +1.3
6,864,467 + +1.5
6,864,476 + +0.4
6,864,476 + +0.5
6,864,477 - +1.5
6,864,557 + -0.7
6,864,557 + -2.6
6,864,617 + +0.2
6,864,617 + -1.6
6,864,618 - +1.1
6,864,656 + +0.8
6,864,657 - -1.1
6,864,719 + AO356_29520 0.11 -2.6
6,864,720 - AO356_29520 0.11 +0.3
6,864,720 - AO356_29520 0.11 +0.9
6,864,734 + AO356_29520 0.11 +0.2
6,864,734 + AO356_29520 0.11 +0.8
6,864,735 - AO356_29520 0.11 -1.6
6,864,768 - AO356_29520 0.13 +0.4
6,864,887 + AO356_29520 0.18 +0.9
6,864,887 + AO356_29520 0.18 +0.3
6,864,888 - AO356_29520 0.18 -0.9
6,864,888 - AO356_29520 0.18 -1.3
6,864,888 - AO356_29520 0.18 -0.1
6,864,957 + AO356_29520 0.21 +0.5
6,864,958 - AO356_29520 0.21 -0.2
6,865,007 + AO356_29520 0.23 +0.1
6,865,008 - AO356_29520 0.23 -0.6
6,865,031 + AO356_29520 0.24 +0.9
6,865,031 + AO356_29520 0.24 +0.8
6,865,031 + AO356_29520 0.24 -0.2

Or see this region's nucleotide sequence