Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27855

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27850 and AO356_27855 overlap by 4 nucleotidesAO356_27855 and AO356_27860 are separated by 818 nucleotides AO356_27850: AO356_27850 - glucose-6-phosphate dehydrogenase, at 6,356,023 to 6,357,543 _27850 AO356_27855: AO356_27855 - 6-phosphogluconate dehydrogenase, at 6,357,540 to 6,358,520 _27855 AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078 _27860 Position (kb) 6357 6358 6359Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6356.543 kb on + strand, within AO356_27850at 6356.543 kb on + strand, within AO356_27850at 6356.544 kb on - strand, within AO356_27850at 6356.544 kb on - strand, within AO356_27850at 6356.628 kb on - strand, within AO356_27850at 6356.814 kb on - strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.864 kb on - strand, within AO356_27850at 6356.877 kb on - strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.958 kb on - strand, within AO356_27850at 6356.972 kb on + strand, within AO356_27850at 6356.972 kb on + strand, within AO356_27850at 6357.156 kb on - strand, within AO356_27850at 6357.210 kb on - strand, within AO356_27850at 6357.210 kb on - strand, within AO356_27850at 6357.210 kb on - strand, within AO356_27850at 6357.210 kb on - strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.242 kb on + strand, within AO356_27850at 6357.243 kb on - strand, within AO356_27850at 6357.243 kb on - strand, within AO356_27850at 6357.243 kb on - strand, within AO356_27850at 6357.243 kb on - strand, within AO356_27850at 6357.243 kb on - strand, within AO356_27850at 6357.607 kb on + strandat 6357.607 kb on + strandat 6357.611 kb on + strandat 6357.612 kb on - strandat 6357.612 kb on - strandat 6357.931 kb on + strand, within AO356_27855at 6357.992 kb on + strand, within AO356_27855at 6357.994 kb on + strand, within AO356_27855at 6357.994 kb on + strand, within AO356_27855at 6357.994 kb on + strand, within AO356_27855at 6357.995 kb on - strand, within AO356_27855at 6357.995 kb on - strand, within AO356_27855at 6357.995 kb on - strand, within AO356_27855at 6358.177 kb on + strand, within AO356_27855at 6358.177 kb on + strand, within AO356_27855at 6358.178 kb on - strand, within AO356_27855at 6358.178 kb on - strand, within AO356_27855at 6358.178 kb on - strand, within AO356_27855at 6358.228 kb on + strand, within AO356_27855at 6358.228 kb on + strand, within AO356_27855at 6358.229 kb on - strand, within AO356_27855at 6358.229 kb on - strand, within AO356_27855at 6358.231 kb on + strand, within AO356_27855at 6358.231 kb on + strand, within AO356_27855at 6358.231 kb on + strand, within AO356_27855at 6358.231 kb on + strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.232 kb on - strand, within AO356_27855at 6358.436 kb on - strandat 6358.478 kb on + strandat 6358.535 kb on + strandat 6358.535 kb on + strandat 6358.544 kb on + strandat 6358.545 kb on - strandat 6358.563 kb on + strandat 6358.564 kb on - strandat 6358.577 kb on - strandat 6358.586 kb on + strandat 6358.586 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.606 kb on + strandat 6358.607 kb on - strandat 6358.730 kb on + strandat 6358.731 kb on - strandat 6358.731 kb on - strandat 6358.731 kb on - strandat 6358.762 kb on + strandat 6358.762 kb on + strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.763 kb on - strandat 6358.764 kb on + strandat 6358.764 kb on + strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.765 kb on - strandat 6358.773 kb on + strandat 6358.834 kb on + strandat 6358.835 kb on - strandat 6359.060 kb on - strandat 6359.249 kb on + strandat 6359.252 kb on + strandat 6359.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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6,356,543 + AO356_27850 0.34 -1.1
6,356,543 + AO356_27850 0.34 +0.3
6,356,544 - AO356_27850 0.34 +0.2
6,356,544 - AO356_27850 0.34 -0.9
6,356,628 - AO356_27850 0.40 +0.8
6,356,814 - AO356_27850 0.52 -1.2
6,356,863 + AO356_27850 0.55 +0.5
6,356,863 + AO356_27850 0.55 +0.8
6,356,863 + AO356_27850 0.55 +0.6
6,356,863 + AO356_27850 0.55 +1.5
6,356,863 + AO356_27850 0.55 +0.1
6,356,864 - AO356_27850 0.55 +1.8
6,356,877 - AO356_27850 0.56 +1.0
6,356,957 + AO356_27850 0.61 +0.7
6,356,957 + AO356_27850 0.61 -0.4
6,356,957 + AO356_27850 0.61 -0.8
6,356,958 - AO356_27850 0.61 +0.4
6,356,972 + AO356_27850 0.62 -2.2
6,356,972 + AO356_27850 0.62 -1.8
6,357,156 - AO356_27850 0.74 -0.4
6,357,210 - AO356_27850 0.78 -1.2
6,357,210 - AO356_27850 0.78 -0.1
6,357,210 - AO356_27850 0.78 -0.5
6,357,210 - AO356_27850 0.78 +1.3
6,357,242 + AO356_27850 0.80 +0.8
6,357,242 + AO356_27850 0.80 +0.5
6,357,242 + AO356_27850 0.80 -2.5
6,357,242 + AO356_27850 0.80 -0.2
6,357,242 + AO356_27850 0.80 -0.5
6,357,242 + AO356_27850 0.80 -0.8
6,357,243 - AO356_27850 0.80 -0.2
6,357,243 - AO356_27850 0.80 -0.1
6,357,243 - AO356_27850 0.80 -1.0
6,357,243 - AO356_27850 0.80 -1.3
6,357,243 - AO356_27850 0.80 -0.4
6,357,607 + +0.5
6,357,607 + +1.0
6,357,611 + +1.0
6,357,612 - -0.9
6,357,612 - +0.0
6,357,931 + AO356_27855 0.40 +1.2
6,357,992 + AO356_27855 0.46 +0.5
6,357,994 + AO356_27855 0.46 -1.5
6,357,994 + AO356_27855 0.46 -0.6
6,357,994 + AO356_27855 0.46 -0.3
6,357,995 - AO356_27855 0.46 -0.8
6,357,995 - AO356_27855 0.46 -1.9
6,357,995 - AO356_27855 0.46 -0.7
6,358,177 + AO356_27855 0.65 +0.5
6,358,177 + AO356_27855 0.65 -1.2
6,358,178 - AO356_27855 0.65 +1.3
6,358,178 - AO356_27855 0.65 -0.5
6,358,178 - AO356_27855 0.65 -0.5
6,358,228 + AO356_27855 0.70 +1.1
6,358,228 + AO356_27855 0.70 -0.4
6,358,229 - AO356_27855 0.70 +1.9
6,358,229 - AO356_27855 0.70 +0.1
6,358,231 + AO356_27855 0.70 -0.1
6,358,231 + AO356_27855 0.70 +0.8
6,358,231 + AO356_27855 0.70 -1.1
6,358,231 + AO356_27855 0.70 -1.0
6,358,232 - AO356_27855 0.71 -0.8
6,358,232 - AO356_27855 0.71 -1.2
6,358,232 - AO356_27855 0.71 -1.4
6,358,232 - AO356_27855 0.71 +0.1
6,358,232 - AO356_27855 0.71 -0.7
6,358,232 - AO356_27855 0.71 -2.0
6,358,436 - -0.2
6,358,478 + +1.5
6,358,535 + -0.5
6,358,535 + +1.1
6,358,544 + +0.5
6,358,545 - +1.6
6,358,563 + +0.1
6,358,564 - -2.7
6,358,577 - -0.7
6,358,586 + -0.3
6,358,586 + -1.1
6,358,606 + -0.4
6,358,606 + +0.8
6,358,606 + +0.9
6,358,606 + -0.6
6,358,606 + +0.5
6,358,607 - +3.0
6,358,730 + -2.5
6,358,731 - -0.2
6,358,731 - -0.3
6,358,731 - -1.0
6,358,762 + -0.3
6,358,762 + -0.3
6,358,763 - +0.8
6,358,763 - -2.4
6,358,763 - -0.4
6,358,763 - -0.0
6,358,764 + -1.0
6,358,764 + +0.3
6,358,765 - -1.4
6,358,765 - +1.3
6,358,765 - +0.6
6,358,765 - -1.7
6,358,773 + +0.5
6,358,834 + -1.8
6,358,835 - -2.1
6,359,060 - -1.9
6,359,249 + +0.8
6,359,252 + -0.2
6,359,253 - -0.4

Or see this region's nucleotide sequence