Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27325

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_27320 and AO356_27325 are separated by 17 nucleotidesAO356_27325 and AO356_27330 overlap by 4 nucleotides AO356_27320: AO356_27320 - MFS transporter permease, at 6,226,386 to 6,227,687 _27320 AO356_27325: AO356_27325 - transketolase, at 6,227,705 to 6,228,553 _27325 AO356_27330: AO356_27330 - transketolase, at 6,228,550 to 6,229,572 _27330 Position (kb) 6227 6228 6229Strain fitness (log2 ratio) -2 -1 0 1 2at 6226.731 kb on + strand, within AO356_27320at 6226.733 kb on + strand, within AO356_27320at 6226.734 kb on - strand, within AO356_27320at 6226.792 kb on - strand, within AO356_27320at 6226.796 kb on + strand, within AO356_27320at 6226.796 kb on + strand, within AO356_27320at 6226.797 kb on - strand, within AO356_27320at 6226.797 kb on - strand, within AO356_27320at 6226.800 kb on + strand, within AO356_27320at 6226.800 kb on + strand, within AO356_27320at 6226.816 kb on - strand, within AO356_27320at 6227.208 kb on - strand, within AO356_27320at 6227.265 kb on + strand, within AO356_27320at 6227.719 kb on - strandat 6227.808 kb on - strand, within AO356_27325at 6227.808 kb on - strand, within AO356_27325at 6227.852 kb on + strand, within AO356_27325at 6227.871 kb on - strand, within AO356_27325at 6227.945 kb on + strand, within AO356_27325at 6227.946 kb on - strand, within AO356_27325at 6227.997 kb on - strand, within AO356_27325at 6227.997 kb on - strand, within AO356_27325at 6228.042 kb on - strand, within AO356_27325at 6228.042 kb on - strand, within AO356_27325at 6228.184 kb on + strand, within AO356_27325at 6228.185 kb on - strand, within AO356_27325at 6228.185 kb on - strand, within AO356_27325at 6228.495 kb on + strandat 6228.496 kb on - strandat 6228.568 kb on - strandat 6228.739 kb on + strand, within AO356_27330at 6228.754 kb on - strand, within AO356_27330at 6228.785 kb on - strand, within AO356_27330at 6228.869 kb on - strand, within AO356_27330at 6229.111 kb on + strand, within AO356_27330at 6229.111 kb on + strand, within AO356_27330at 6229.111 kb on + strand, within AO356_27330at 6229.112 kb on - strand, within AO356_27330at 6229.136 kb on + strand, within AO356_27330at 6229.156 kb on + strand, within AO356_27330at 6229.156 kb on + strand, within AO356_27330at 6229.156 kb on + strand, within AO356_27330at 6229.215 kb on - strand, within AO356_27330at 6229.467 kb on - strand, within AO356_27330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
remove
6,226,731 + AO356_27320 0.26 +0.3
6,226,733 + AO356_27320 0.27 +0.1
6,226,734 - AO356_27320 0.27 +1.4
6,226,792 - AO356_27320 0.31 +0.6
6,226,796 + AO356_27320 0.31 -1.7
6,226,796 + AO356_27320 0.31 +0.5
6,226,797 - AO356_27320 0.32 -0.5
6,226,797 - AO356_27320 0.32 +0.0
6,226,800 + AO356_27320 0.32 -2.5
6,226,800 + AO356_27320 0.32 -2.4
6,226,816 - AO356_27320 0.33 -1.3
6,227,208 - AO356_27320 0.63 +0.6
6,227,265 + AO356_27320 0.68 -2.2
6,227,719 - -0.4
6,227,808 - AO356_27325 0.12 -0.4
6,227,808 - AO356_27325 0.12 +1.0
6,227,852 + AO356_27325 0.17 +0.0
6,227,871 - AO356_27325 0.20 +0.0
6,227,945 + AO356_27325 0.28 -0.9
6,227,946 - AO356_27325 0.28 +0.7
6,227,997 - AO356_27325 0.34 -1.0
6,227,997 - AO356_27325 0.34 +1.0
6,228,042 - AO356_27325 0.40 -0.4
6,228,042 - AO356_27325 0.40 -1.5
6,228,184 + AO356_27325 0.56 -1.7
6,228,185 - AO356_27325 0.57 -0.4
6,228,185 - AO356_27325 0.57 -0.7
6,228,495 + -1.2
6,228,496 - +1.1
6,228,568 - +0.5
6,228,739 + AO356_27330 0.18 -0.4
6,228,754 - AO356_27330 0.20 -0.3
6,228,785 - AO356_27330 0.23 -1.9
6,228,869 - AO356_27330 0.31 -1.5
6,229,111 + AO356_27330 0.55 -0.3
6,229,111 + AO356_27330 0.55 +0.4
6,229,111 + AO356_27330 0.55 +0.0
6,229,112 - AO356_27330 0.55 +0.9
6,229,136 + AO356_27330 0.57 -0.5
6,229,156 + AO356_27330 0.59 +0.4
6,229,156 + AO356_27330 0.59 -0.1
6,229,156 + AO356_27330 0.59 +0.1
6,229,215 - AO356_27330 0.65 -1.0
6,229,467 - AO356_27330 0.90 +2.7

Or see this region's nucleotide sequence