Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25855 and AO356_25860 are separated by 92 nucleotides AO356_25860 and AO356_25865 are separated by 118 nucleotides AO356_25865 and AO356_25870 are separated by 191 nucleotides
AO356_25855: AO356_25855 - hypothetical protein, at 5,845,759 to 5,846,253
_25855
AO356_25860: AO356_25860 - hypothetical protein, at 5,846,346 to 5,847,017
_25860
AO356_25865: AO356_25865 - peroxidase, at 5,847,136 to 5,847,636
_25865
AO356_25870: AO356_25870 - secretion protein HlyD, at 5,847,828 to 5,849,141
_25870
Position (kb) 5847
5848 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5846.298 kb on - strand at 5846.300 kb on - strand at 5846.300 kb on - strand at 5846.300 kb on - strand at 5846.305 kb on + strand at 5846.306 kb on - strand at 5846.380 kb on + strand at 5846.454 kb on + strand, within AO356_25860 at 5846.535 kb on + strand, within AO356_25860 at 5846.535 kb on + strand, within AO356_25860 at 5846.536 kb on - strand, within AO356_25860 at 5846.536 kb on - strand, within AO356_25860 at 5846.536 kb on - strand, within AO356_25860 at 5846.536 kb on - strand, within AO356_25860 at 5846.547 kb on + strand, within AO356_25860 at 5846.547 kb on + strand, within AO356_25860 at 5846.548 kb on - strand, within AO356_25860 at 5846.548 kb on - strand, within AO356_25860 at 5846.629 kb on - strand, within AO356_25860 at 5846.631 kb on + strand, within AO356_25860 at 5846.631 kb on + strand, within AO356_25860 at 5846.698 kb on + strand, within AO356_25860 at 5846.698 kb on + strand, within AO356_25860 at 5846.698 kb on + strand, within AO356_25860 at 5846.698 kb on + strand, within AO356_25860 at 5846.699 kb on - strand, within AO356_25860 at 5846.699 kb on - strand, within AO356_25860 at 5846.732 kb on + strand, within AO356_25860 at 5846.732 kb on + strand, within AO356_25860 at 5846.733 kb on - strand, within AO356_25860 at 5846.733 kb on - strand, within AO356_25860 at 5846.757 kb on + strand, within AO356_25860 at 5846.757 kb on + strand, within AO356_25860 at 5846.758 kb on - strand, within AO356_25860 at 5846.758 kb on - strand, within AO356_25860 at 5847.015 kb on + strand at 5847.016 kb on - strand at 5847.055 kb on + strand at 5847.067 kb on + strand at 5847.067 kb on + strand at 5847.068 kb on - strand at 5847.485 kb on - strand, within AO356_25865 at 5847.607 kb on + strand at 5847.607 kb on + strand at 5847.607 kb on + strand at 5847.717 kb on + strand at 5847.725 kb on + strand at 5847.773 kb on - strand at 5848.337 kb on + strand, within AO356_25870 at 5848.337 kb on + strand, within AO356_25870 at 5848.338 kb on - strand, within AO356_25870 at 5848.384 kb on - strand, within AO356_25870
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 5,846,298 - +0.5 5,846,300 - +0.3 5,846,300 - -0.9 5,846,300 - -0.4 5,846,305 + +0.1 5,846,306 - -1.2 5,846,380 + -0.8 5,846,454 + AO356_25860 0.16 +0.2 5,846,535 + AO356_25860 0.28 +0.7 5,846,535 + AO356_25860 0.28 -0.9 5,846,536 - AO356_25860 0.28 -0.3 5,846,536 - AO356_25860 0.28 -1.2 5,846,536 - AO356_25860 0.28 +0.2 5,846,536 - AO356_25860 0.28 +1.1 5,846,547 + AO356_25860 0.30 +1.0 5,846,547 + AO356_25860 0.30 +1.0 5,846,548 - AO356_25860 0.30 +0.4 5,846,548 - AO356_25860 0.30 -2.1 5,846,629 - AO356_25860 0.42 +0.5 5,846,631 + AO356_25860 0.42 -0.6 5,846,631 + AO356_25860 0.42 +0.5 5,846,698 + AO356_25860 0.52 +1.5 5,846,698 + AO356_25860 0.52 -0.8 5,846,698 + AO356_25860 0.52 +0.3 5,846,698 + AO356_25860 0.52 +0.9 5,846,699 - AO356_25860 0.53 +0.2 5,846,699 - AO356_25860 0.53 -1.4 5,846,732 + AO356_25860 0.57 -0.4 5,846,732 + AO356_25860 0.57 +0.1 5,846,733 - AO356_25860 0.58 -1.0 5,846,733 - AO356_25860 0.58 -0.1 5,846,757 + AO356_25860 0.61 -0.3 5,846,757 + AO356_25860 0.61 +0.4 5,846,758 - AO356_25860 0.61 -1.5 5,846,758 - AO356_25860 0.61 +0.1 5,847,015 + +0.7 5,847,016 - +0.3 5,847,055 + -1.2 5,847,067 + +0.8 5,847,067 + +0.2 5,847,068 - -0.4 5,847,485 - AO356_25865 0.70 -1.5 5,847,607 + -0.2 5,847,607 + +1.6 5,847,607 + +0.7 5,847,717 + -0.9 5,847,725 + +0.6 5,847,773 - -0.3 5,848,337 + AO356_25870 0.39 +2.8 5,848,337 + AO356_25870 0.39 -0.1 5,848,338 - AO356_25870 0.39 +0.5 5,848,384 - AO356_25870 0.42 +0.7
Or see this region's nucleotide sequence