Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23430 and AO356_23435 are separated by 14 nucleotides AO356_23435 and AO356_23440 overlap by 8 nucleotides AO356_23440 and AO356_23445 are separated by 245 nucleotides
AO356_23430: AO356_23430 - NAD-dependent deacetylase, at 5,254,131 to 5,254,886
_23430
AO356_23435: AO356_23435 - hypothetical protein, at 5,254,901 to 5,255,380
_23435
AO356_23440: AO356_23440 - calpastatin, at 5,255,373 to 5,255,801
_23440
AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829
_23445
Position (kb)
5254
5255
5256 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5253.918 kb on + strand at 5253.918 kb on + strand at 5253.919 kb on - strand at 5253.985 kb on - strand at 5254.041 kb on - strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.165 kb on + strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.166 kb on - strand at 5254.217 kb on + strand, within AO356_23430 at 5254.218 kb on - strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.223 kb on + strand, within AO356_23430 at 5254.224 kb on - strand, within AO356_23430 at 5254.224 kb on - strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.678 kb on + strand, within AO356_23430 at 5254.679 kb on - strand, within AO356_23430 at 5254.909 kb on + strand at 5254.909 kb on + strand at 5254.909 kb on + strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5254.910 kb on - strand at 5255.000 kb on + strand, within AO356_23435 at 5255.000 kb on + strand, within AO356_23435 at 5255.001 kb on - strand, within AO356_23435 at 5255.078 kb on + strand, within AO356_23435 at 5255.078 kb on + strand, within AO356_23435 at 5255.097 kb on + strand, within AO356_23435 at 5255.310 kb on + strand, within AO356_23435 at 5255.311 kb on - strand, within AO356_23435 at 5255.370 kb on + strand at 5255.374 kb on + strand at 5255.374 kb on + strand at 5255.374 kb on + strand at 5255.375 kb on - strand at 5255.375 kb on - strand at 5255.399 kb on + strand at 5255.399 kb on + strand at 5255.400 kb on - strand at 5255.400 kb on - strand at 5255.400 kb on - strand at 5255.403 kb on + strand at 5255.403 kb on + strand at 5255.404 kb on - strand at 5255.404 kb on - strand at 5255.456 kb on - strand, within AO356_23440 at 5255.456 kb on - strand, within AO356_23440 at 5255.647 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.650 kb on + strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.651 kb on - strand, within AO356_23440 at 5255.682 kb on + strand, within AO356_23440 at 5255.682 kb on + strand, within AO356_23440 at 5255.733 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.755 kb on + strand, within AO356_23440 at 5255.756 kb on - strand, within AO356_23440 at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.801 kb on + strand at 5255.802 kb on - strand at 5255.900 kb on - strand at 5255.940 kb on + strand at 5255.940 kb on + strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.943 kb on - strand at 5255.957 kb on - strand at 5255.959 kb on - strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.987 kb on - strand at 5256.025 kb on + strand at 5256.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 5,253,918 + -1.6 5,253,918 + -1.1 5,253,919 - -0.9 5,253,985 - -1.2 5,254,041 - -0.1 5,254,165 + +1.5 5,254,165 + +1.2 5,254,165 + -0.0 5,254,165 + -1.4 5,254,166 - -1.0 5,254,166 - +0.6 5,254,166 - +0.0 5,254,166 - -0.2 5,254,217 + AO356_23430 0.11 -0.8 5,254,218 - AO356_23430 0.12 +0.1 5,254,223 + AO356_23430 0.12 -2.5 5,254,223 + AO356_23430 0.12 +1.2 5,254,223 + AO356_23430 0.12 +0.7 5,254,224 - AO356_23430 0.12 -0.9 5,254,224 - AO356_23430 0.12 -0.9 5,254,678 + AO356_23430 0.72 -0.3 5,254,678 + AO356_23430 0.72 -0.5 5,254,678 + AO356_23430 0.72 -0.2 5,254,679 - AO356_23430 0.72 -2.1 5,254,909 + -0.2 5,254,909 + +0.6 5,254,909 + -0.8 5,254,910 - +0.0 5,254,910 - -0.2 5,254,910 - -0.9 5,254,910 - +0.0 5,255,000 + AO356_23435 0.21 +1.6 5,255,000 + AO356_23435 0.21 +0.6 5,255,001 - AO356_23435 0.21 -1.4 5,255,078 + AO356_23435 0.37 -0.4 5,255,078 + AO356_23435 0.37 +2.7 5,255,097 + AO356_23435 0.41 +1.2 5,255,310 + AO356_23435 0.85 -0.7 5,255,311 - AO356_23435 0.85 +0.1 5,255,370 + +0.0 5,255,374 + -0.4 5,255,374 + +1.9 5,255,374 + -0.9 5,255,375 - +0.4 5,255,375 - +0.5 5,255,399 + +1.1 5,255,399 + -1.6 5,255,400 - +0.8 5,255,400 - +0.0 5,255,400 - -0.5 5,255,403 + +1.1 5,255,403 + +0.7 5,255,404 - -0.7 5,255,404 - -1.7 5,255,456 - AO356_23440 0.19 -1.5 5,255,456 - AO356_23440 0.19 -1.0 5,255,647 + AO356_23440 0.64 -0.7 5,255,650 + AO356_23440 0.65 -0.2 5,255,650 + AO356_23440 0.65 +1.2 5,255,650 + AO356_23440 0.65 -0.3 5,255,650 + AO356_23440 0.65 +0.8 5,255,651 - AO356_23440 0.65 +0.9 5,255,651 - AO356_23440 0.65 +0.2 5,255,651 - AO356_23440 0.65 -0.1 5,255,682 + AO356_23440 0.72 -0.6 5,255,682 + AO356_23440 0.72 -0.7 5,255,733 + AO356_23440 0.84 -1.4 5,255,755 + AO356_23440 0.89 -0.9 5,255,755 + AO356_23440 0.89 -1.0 5,255,755 + AO356_23440 0.89 +0.1 5,255,756 - AO356_23440 0.89 +1.4 5,255,801 + -0.6 5,255,801 + -0.5 5,255,801 + +0.3 5,255,801 + -0.9 5,255,802 - -1.5 5,255,900 - +0.7 5,255,940 + -0.4 5,255,940 + -0.3 5,255,941 - -2.4 5,255,941 - -1.1 5,255,941 - +0.5 5,255,942 + +0.7 5,255,942 + -1.1 5,255,942 + -0.2 5,255,943 - -0.9 5,255,957 - -0.3 5,255,959 - +1.1 5,255,986 + -0.5 5,255,986 + +0.4 5,255,986 + +0.5 5,255,986 + -1.2 5,255,986 + -2.7 5,255,987 - -0.5 5,256,025 + -2.9 5,256,026 - +0.5
Or see this region's nucleotide sequence